CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g29035

Gene name ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.32 35.7 At3g29035 822547 ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3) Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500. S.X. H.G.
0.57 73.8 At2g28110 817357 FRA8 (FRAGILE FIBER 8) Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings. S.X. H.G.
0.55 70.6 At2g37750 818352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.25 22.6 At4g37010 829855 caltractin, putative / centrin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB S.X. H.G.
0.19 12.7 At2g40110 818600 yippee family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
44.3 99.8 GSM184914 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
39.6 99.8 GSM179969 Arabidopsis aux1 mutant roots, ethylene treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
37.6 99.7 GSM179960 Arabidopsis roots, ethylene treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
36.8 99.7 GSM290758 root - 01% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
31.7 99.7 GSM291024 root - 08% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
31.1 99.7 GSM291119 root - 21% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
30.4 99.7 GSM179961 Arabidopsis roots, ethylene treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
30.1 99.7 E-MEXP-1443-raw-cel-1581869921
29.9 99.7 GSM184913 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
28.2 99.7 GSM157333 Coates_1-5_Col-0_Rep2_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.57 6e-99 361 At5g39610 833957 ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6) Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510. C.G. S.X.
0.27 8e-43 174 At5g07680 830661 ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.29 6e-25 115 At5g61430 836264 ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.10 6e-16 85 At3g04060 819561 anac046 (Arabidopsis NAC domain containing protein 46) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.16 2e-15 83 At5g18270 831945 ANAC087 F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.16 9e-12 71 At3g18400 821369 anac058 (Arabidopsis NAC domain containing protein 58) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO C.G. S.X.
0.10 8e-9 61 At1g32510 840145 anac011 (Arabidopsis NAC domain containing protein 11) F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 2e-4 48 Glycine max GmaAffx.90313.1.S1_at CF806038 NAC domain protein - 9e-11 At5g39610 ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6) C.G. S.X.
0.02 9e-1 34 Hordeum vulgare Contig9031_at Contig9031 - - 2e-4 At5g18270 ANAC087 C.G. S.X.
0.08 4e-9 63 Oryza sativa Os09g0497900 AK102511.1 - No apical meristem (NAM) protein domain containingprotein 1e-21 At3g18400 anac058 (Arabidopsis NAC domain containing protein 58) C.G. S.X.
0.33 2e-28 127 Populus trichocarpa PtpAffx.36282.1.S1_s_at AJ776972 NAC domain protein, IPR003441 - 6e-46 At5g61430 ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100) C.G. S.X.
0.04 2e+0 34 Triticum aestivum TaAffx.117376.1.S1_at BQ605728 - - 1e-15 At3g04060 anac046 (Arabidopsis NAC domain containing protein 46) C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1610480_at CA809362 hypothetical protein LOC100254239 - 3e-9 At1g56010 NAC1 C.G. S.X.
0.03 8e-1 34 Zea mays Zm.5914.1.A1_at CA402103 nac4 protein - 4e-12 At3g04060 anac046 (Arabidopsis NAC domain containing protein 46) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007275 The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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