Gene omics information

Query gene ID At3g28780
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5166.3At3g28780822510unknown proteinF:molecular_function unknown;P:pollen exine formation;C:endomembrane system;BOMPFVAS.X.H.G.
0.8592.4At5g09550830814RAB GDP-dissociation inhibitorF:RAB GDP-dissociation inhibitor activity;P:regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPBS.X.H.G.
0.8190.4At4g29340829055PRF4 (PROFILIN 4)Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining.S.X.H.G.
0.7788.0At1g26480839189GRF12 (GENERAL REGULATORY FACTOR 12)14-3-3 protein GF14iota (grf12)S.X.H.G.
0.7486.1At5g17480831614APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)F:calcium ion binding;P:biological_process unknown;C:cytoplasm;MPFOBS.X.H.G.
0.6982.9At3g28980822538unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVAS.X.H.G.
0.5570.6At2g13570815843NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MOPFS.X.H.G.
0.5267.4At2g46860819299AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3)Encodes a protein that might have inorganic pyrophosphatase activity.S.X.H.G.
0.4862.5At4g13560826989UNE15 (unfertilized embryo sac 15)F:molecular_function unknown;P:embryonic development ending in seed dormancy, double fertilization forming a zygote and endosperm;C:cellular_component unknown;PMBFOS.X.H.G.
0.4862.5At3g28790822511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOFBPVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
266.0100.0GSM131593ATGE_36_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
250.2100.0GSM131591ATGE_36_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
244.9100.0GSM131592ATGE_36_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
151.399.9GSM239254CaMV::DME stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
133.299.9GSM106969opr3_OPDA_22 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-344At5g61720836294unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMC.G.S.X.
0.044e-344At3g28840822516unknown proteinF:unknown;P:unknown;C:endomembrane system;BOMPFVAC.G.S.X.
0.017e-240At4g20230827770terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFOC.G.S.X.
0.017e-240At1g01590837194FRO1 (FERRIC REDUCTION OXIDASE 1)Encodes a ferric-chelate reductase that is expressed at extremely low levels in Fe deficiency-induced seedlings.C.G.S.X.
0.013e-138At5g13490831193AAC2 (ADP/ATP carrier 2)Encodes mitochondrial ADP/ATP carrierC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxPsAffx.C193000004_atPsAffx.C193000004--7e-1At3g63410APG1 (ALBINO OR PALE GREEN MUTANT 1)C.G.S.X.
0.012e+034Hordeum vulgareHT09D15r_s_atHT09D15r--3e+0At5g46730glycine-rich proteinC.G.S.X.
0.035e-138Oryza sativaOs.46916.1.S1_at---0C.G.S.X.
0.021e+036Populus trichocarpaPtpAffx.5388.2.A1_atCV236598hypothetical protein-1e+0At5g36659-C.G.S.X.
0.021e+036Triticum aestivumTa.21567.1.S1_atCA696314--1e+0At3g4459060S acidic ribosomal protein P2 (RPP2D)C.G.S.X.
0.011e+034Vitis vinifera1620709_atCB918852--1e-65At5g12370SEC10 (EXOCYST COMPLEX COMPONENT SEC10)C.G.S.X.
0.012e+034Zea maysZmAffx.810.1.A1_atAI770396--2e-1At3g01880unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010584The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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