CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g28780

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.51 66.3 At3g28780 822510 unknown protein F:molecular_function unknown;P:pollen exine formation;C:endomembrane system;BOMPFVA S.X. H.G.
0.85 92.4 At5g09550 830814 RAB GDP-dissociation inhibitor F:RAB GDP-dissociation inhibitor activity;P:regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPB S.X. H.G.
0.81 90.4 At4g29340 829055 PRF4 (PROFILIN 4) Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining. S.X. H.G.
0.77 88.0 At1g26480 839189 GRF12 (GENERAL REGULATORY FACTOR 12) 14-3-3 protein GF14iota (grf12) S.X. H.G.
0.74 86.1 At5g17480 831614 APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1) F:calcium ion binding;P:biological_process unknown;C:cytoplasm;MPFOB S.X. H.G.
0.69 82.9 At3g28980 822538 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA S.X. H.G.
0.55 70.6 At2g13570 815843 NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MOPF S.X. H.G.
0.52 67.4 At2g46860 819299 AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3) Encodes a protein that might have inorganic pyrophosphatase activity. S.X. H.G.
0.48 62.5 At4g13560 826989 UNE15 (unfertilized embryo sac 15) F:molecular_function unknown;P:embryonic development ending in seed dormancy, double fertilization forming a zygote and endosperm;C:cellular_component unknown;PMBFO S.X. H.G.
0.48 62.5 At3g28790 822511 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOFBPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
332.6 100.0 E-ATMX-35-raw-cel-1574334848
286.1 100.0 E-MEXP-1138-raw-cel-1432773322
273.1 100.0 E-MEXP-1138-raw-cel-1432773290
266.0 100.0 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
250.7 100.0 E-MEXP-1138-raw-cel-1432773258
250.2 100.0 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
244.9 100.0 GSM131592 ATGE_36_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
177.3 100.0 E-ATMX-35-raw-cel-1574334880
151.3 99.9 GSM239254 CaMV::DME stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
133.2 99.9 GSM106969 opr3_OPDA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-3 44 At5g61720 836294 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM C.G. S.X.
0.04 4e-3 44 At3g28840 822516 unknown protein F:unknown;P:unknown;C:endomembrane system;BOMPFVA C.G. S.X.
0.01 7e-2 40 At4g20230 827770 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFO C.G. S.X.
0.01 7e-2 40 At1g01590 837194 FRO1 (FERRIC REDUCTION OXIDASE 1) Encodes a ferric-chelate reductase that is expressed at extremely low levels in Fe deficiency-induced seedlings. C.G. S.X.
0.01 3e-1 38 At5g13490 831193 AAC2 (ADP/ATP carrier 2) Encodes mitochondrial ADP/ATP carrier C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max PsAffx.C193000004_at PsAffx.C193000004 - - 7e-1 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HT09D15r_s_at HT09D15r - - 3e+0 At5g46730 glycine-rich protein C.G. S.X.
0.03 5e-1 38 Oryza sativa Os.46916.1.S1_at - - - 0 C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.5388.2.A1_at CV236598 hypothetical protein - 1e+0 At5g36659 - C.G. S.X.
0.02 1e+0 36 Triticum aestivum Ta.21567.1.S1_at CA696314 - - 1e+0 At3g44590 60S acidic ribosomal protein P2 (RPP2D) C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1620709_at CB918852 - - 1e-65 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.01 2e+0 34 Zea mays ZmAffx.810.1.A1_at AI770396 - - 2e-1 At3g01880 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010584 The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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