CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g28770

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g28770 822509 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOBFPVA S.X. H.G.
0.91 95.6 At5g37060 833677 ATCHX24 member of Putative Na+/H+ antiporter family S.X. H.G.
0.91 95.6 At5g39310 833927 ATEXPA24 (ARABIDOPSIS THALIANA EXPANSIN A24) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) S.X. H.G.
0.77 88.0 At5g01690 830460 ATCHX27 member of Putative Na+/H+ antiporter family S.X. H.G.
0.57 73.8 At1g79250 844265 AGC1.7 (AGC KINASE 1.7) F:kinase activity;P:pollen tube growth, unidimensional cell growth;C:unknown;MOPFBVA S.X. H.G.
0.56 73.0 At4g15980 827282 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:apoplast, plant-type cell wall;BMOPFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
842.5 100.0 E-MEXP-1138-raw-cel-1432773258
759.2 100.0 E-MEXP-1138-raw-cel-1432773322
692.0 100.0 E-MEXP-1138-raw-cel-1432773290
335.0 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
334.0 100.0 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
267.6 100.0 E-MEXP-1138-raw-cel-1432773066
233.0 100.0 E-MEXP-1138-raw-cel-1432773034
176.3 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
164.5 100.0 GSM106917 opr3_JA_22 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
140.1 99.9 GSM106969 opr3_OPDA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.00 2e-1 40 At5g15920 831449 structural maintenance of chromosomes (SMC) family protein (MSS2) F:ATP binding;P:chromosome segregation;C:chromosome, nucleus;MOBFPAV C.G. S.X.
0.01 8e-1 38 At5g58530 835966 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMOBF C.G. S.X.
0.01 8e-1 38 At3g21520 821706 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 8e-1 38 At3g07920 819983 translation initiation factor F:translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOAFPV C.G. S.X.
0.01 8e-1 38 At3g52570 824423 ATP binding F:ATP binding;P:unknown;C:mitochondrion;BOMFPA C.G. S.X.
0.01 8e-1 38 At2g45590 819167 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOFBVA C.G. S.X.
0.00 8e-1 38 At2g39280 818513 RAB GTPase activator F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPBAV C.G. S.X.
0.01 3e+0 36 At5g15010 831353 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFBA C.G. S.X.
0.00 3e+0 36 At5g46330 834676 FLS2 (FLAGELLIN-SENSITIVE 2) Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-2 44 Glycine max Gma.16450.1.S1_at CA803065 - - 2e-10 At4g18070 unknown protein C.G. S.X.
0.01 1e-1 40 Hordeum vulgare Contig22007_at Contig22007 - - 3e+0 At5g10440 CYCD4 C.G. S.X.
0.01 1e-1 42 Oryza sativa OsAffx.19051.1.S1_at - - - 0 C.G. S.X.
0.01 3e-1 40 Populus trichocarpa PtpAffx.59515.1.S1_s_at BU895418 hypothetical protein - 2e-2 At5g61470 zinc finger (C2H2 type) family protein C.G. S.X.
0.01 3e+0 36 Triticum aestivum TaAffx.7671.1.S1_at CA653975 - - 1e+0 At4g22700 LBD32 (LOB DOMAIN-CONTAINING PROTEIN 32) C.G. S.X.
0.01 2e-1 38 Vitis vinifera 1620023_at CF204115.1 - - 1e+0 At2g29605 unknown protein C.G. S.X.
0.01 5e+0 34 Zea mays Zm.9472.1.A1_at CF006768 hypothetical protein LOC100276276 - 6e-6 At5g23760 heavy-metal-associated domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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