CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g28690

Gene name protein kinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At3g28690 822499 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.50 65.3 At1g18470 838427 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPOVF S.X. H.G.
0.33 38.1 At5g42870 834298 lipin family protein F:unknown;P:biological_process unknown;C:apoplast, membrane;MFBOP S.X. H.G.
0.29 30.3 At1g68820 843214 membrane protein, putative F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF S.X. H.G.
0.18 11.4 At3g10250 820187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.2 99.6 GSM290758 root - 01% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
18.1 99.5 GSM131457 AtGen_6-9821_Heatstress(3h)+1hrecovery-Roots-4.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
17.4 99.5 GSM291024 root - 08% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
17.2 99.5 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
17.0 99.5 GSM270868 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
16.6 99.5 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
16.6 99.5 GSM157329 Coates_1-1_Col-0_Rep1_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
15.3 99.4 GSM157332 Coates_1-4_ara1/2mut_Rep1_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
14.4 99.4 GSM291119 root - 21% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
14.3 99.4 E-MEXP-828-raw-cel-1156922296
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.49 4e-85 315 At5g15080 831360 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.52 6e-81 301 At3g01300 820989 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.07 3e-15 83 At2g26290 817169 ARSK1 (root-specific kinase 1) F:kinase activity;P:response to salt stress, response to water deprivation, response to abscisic acid stimulus;C:unknown;MPOBFVA C.G. S.X.
0.07 2e-13 77 At5g01020 831918 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.10 2e-10 67 At1g61590 842455 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA C.G. S.X.
0.06 4e-8 59 At1g69790 843315 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA C.G. S.X.
0.08 9e-6 52 At5g02290 831880 NAK Encodes a candidate protein kinase NAK that is similar to the oncogenes met and abl. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 7e-23 109 Glycine max GmaAffx.8472.1.S1_at AW350979 - - 2e-40 At3g01300 protein kinase, putative C.G. S.X.
0.32 1e-77 289 Hordeum vulgare Contig11783_at Contig11783 - - 6e-36 At3g01300 protein kinase, putative C.G. S.X.
0.31 1e-21 105 Oryza sativa Os09g0361100 AK064216.1 - Protein kinase APK1A (EC 2.7.1.-) 1e-70 At5g15080 protein kinase, putative C.G. S.X.
0.59 6e-54 212 Populus trichocarpa PtpAffx.213907.1.S1_s_at pmrna27117 hypothetical protein - 5e-54 At3g28690 protein kinase, putative C.G. S.X.
0.09 4e-2 40 Triticum aestivum Ta.7718.2.S1_x_at CA593071 - - 7e-8 At1g76360 protein kinase, putative C.G. S.X.
0.09 1e-5 50 Vitis vinifera 1615314_at CB008162 - - 2e-5 At3g28690 protein kinase, putative C.G. S.X.
0.10 4e-6 52 Zea mays ZmAffx.905.1.S1_at AI770915 - - 1e-11 At2g20300 ALE2 (Abnormal Leaf Shape 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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