CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g28630

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At3g28630 822493 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM S.X. H.G.
0.44 57.2 At3g47660 823920 Ran GTPase binding / chromatin binding / zinc ion binding F:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:unknown;MOBPFAV S.X. H.G.
0.44 57.2 At3g48010 823956 ATCNGC16 member of Cyclic nucleotide gated channel family S.X. H.G.
0.40 50.8 At1g24330 839049 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:chloroplast;PMOFBV S.X. H.G.
0.29 30.3 At1g69280 843259 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
305.8 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
205.8 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
177.2 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
175.0 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
171.8 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
159.6 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
141.1 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
124.4 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
123.8 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
117.1 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-1 38 At5g66960 836830 prolyl oligopeptidase family protein F:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:membrane;OBMPFAV C.G. S.X.
0.03 1e-1 38 At2g30560 817605 glycine-rich protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.01 1e-1 38 At1g12040 837756 LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper. C.G. S.X.
0.01 5e-1 36 At5g23880 832453 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3'end formation apparatus. C.G. S.X.
0.02 5e-1 36 At5g66400 836772 RAB18 (RESPONSIVE TO ABA 18) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells. C.G. S.X.
0.02 5e-1 36 At5g52440 835320 HCF106 HCF106; nuclear gene for chloroplast. Thylakoid membrane delta pH translocation pathway component protein; related to Escherichia coli TatA and TatB C.G. S.X.
0.01 5e-1 36 At5g02480 831883 - F:unknown;P:unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Glycine max GmaAffx.78729.1.S1_at BQ611667 - - 9e-7 At2g21590 APL4 C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig18572_at Contig18572 - - 6e-5 At4g33660 unknown protein C.G. S.X.
0.03 6e-2 40 Oryza sativa OsAffx.2092.1.S1_at - - - 0 C.G. S.X.
0.18 1e-8 61 Populus trichocarpa PtpAffx.107592.1.A1_at CV274863 hypothetical protein - 7e-9 At3g28630 - C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.9386.1.S1_at CA600245 - - 1e-3 At3g53235 unknown protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1621019_at CF201902.1 - - 1e+0 At5g65360 histone H3 C.G. S.X.
0.03 2e-1 36 Zea mays ZmAffx.593.1.A1_at AI715021 - - 2e-1 At3g28630 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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