Gene omics information

Query gene ID At3g28630
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2522.6At3g28630822493-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMS.X.H.G.
0.4457.2At3g47660823920Ran GTPase binding / chromatin binding / zinc ion bindingF:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:unknown;MOBPFAVS.X.H.G.
0.4457.2At3g48010823956ATCNGC16member of Cyclic nucleotide gated channel familyS.X.H.G.
0.4050.8At1g24330839049armadillo/beta-catenin repeat family protein / U-box domain-containing family proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:chloroplast;PMOFBVS.X.H.G.
0.2930.3At1g69280843259unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
305.8100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
205.8100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
175.0100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
159.699.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-138At5g66960836830prolyl oligopeptidase family proteinF:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:membrane;OBMPFAVC.G.S.X.
0.031e-138At2g30560817605glycine-rich proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MBOPFVAC.G.S.X.
0.011e-138At1g12040837756LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1)encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper.C.G.S.X.
0.015e-136At5g23880832453CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3'end formation apparatus.C.G.S.X.
0.025e-136At5g66400836772RAB18 (RESPONSIVE TO ABA 18)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.C.G.S.X.
0.025e-136At5g52440835320HCF106HCF106; nuclear gene for chloroplast. Thylakoid membrane delta pH translocation pathway component protein; related to Escherichia coli TatA and TatBC.G.S.X.
0.015e-136At5g02480831883-F:unknown;P:unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.037e-136Glycine maxGmaAffx.78729.1.S1_atBQ611667--9e-7At2g21590APL4C.G.S.X.
0.032e-136Hordeum vulgareContig18572_atContig18572--6e-5At4g33660unknown proteinC.G.S.X.
0.036e-240Oryza sativaOsAffx.2092.1.S1_at---0C.G.S.X.
0.181e-861Populus trichocarpaPtpAffx.107592.1.A1_atCV274863hypothetical protein-7e-9At3g28630-C.G.S.X.
0.031e-138Triticum aestivumTaAffx.9386.1.S1_atCA600245--1e-3At3g53235unknown proteinC.G.S.X.
0.022e+032Vitis vinifera1621019_atCF201902.1--1e+0At5g65360histone H3C.G.S.X.
0.032e-136Zea maysZmAffx.593.1.A1_atAI715021--2e-1At3g28630-C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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