CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g28550

Gene name proline-rich extensin-like family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.78 88.6 At3g28550 822485 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA S.X. H.G.
0.88 94.0 At5g05500 830433 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.88 94.0 At4g34580 829610 COW1 (CAN OF WORMS1) Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth. S.X. H.G.
0.88 94.0 At2g03720 814899 MRH6 (morphogenesis of root hair 6) Involved in root hair development S.X. H.G.
0.87 93.5 At5g67400 836876 peroxidase 73 (PER73) (P73) (PRXR11) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.86 93.1 At4g30320 829155 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.86 93.1 At5g04960 830378 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO S.X. H.G.
0.85 92.4 At4g33730 829515 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.85 92.4 At5g24313 832499 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.85 92.4 At5g35190 833473 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
336.5 100.0 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
174.2 100.0 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
109.4 99.9 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
109.3 99.9 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
97.3 99.9 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
95.4 99.9 GSM142674 SF002_ATH1_A5-Fille-WTnodex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
86.1 99.9 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
77.8 99.9 GSM184844 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
76.0 99.9 GSM184843 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
69.7 99.9 GSM184835 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5 GSE7639 Expression analysis of root developmental zones after treatment with salt
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.63 0 1439 At3g54590 824624 ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN) Encodes a hydroxyproline-rich glycoprotein. C.G. S.X.
0.49 0 1136 At3g54580 824623 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA C.G. S.X.
0.53 0 1059 At5g06640 830552 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA C.G. S.X.
0.54 0 1023 At2g24980 817037 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA C.G. S.X.
0.52 0 928 At4g08410 826400 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA C.G. S.X.
0.45 0 783 At5g06630 830551 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA C.G. S.X.
0.45 0 763 At1g23720 838982 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA C.G. S.X.
0.48 0 728 At4g08400 826398 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:cellular_component unknown;MFPOBVA C.G. S.X.
0.26 5e-139 496 At5g35190 833473 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-3 46 Glycine max GmaAffx.90749.1.S1_x_at CF806474 - - 3e-4 At2g43150 proline-rich extensin-like family protein C.G. S.X.
0.01 7e-1 36 Hordeum vulgare AJ421947.1_s_at AJ421947.1 - - 3e-5 At4g35460 NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B) C.G. S.X.
0.01 3e+0 36 Oryza sativa Os01g0176750 NM_191612.1 - - 7e-1 At2g42200 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) C.G. S.X.
0.10 6e-4 48 Populus trichocarpa PtpAffx.224886.1.S1_x_at pmrna43793 hypothetical protein - 2e-6 At1g26240 proline-rich extensin-like family protein C.G. S.X.
0.02 4e-1 38 Triticum aestivum TaAffx.86293.1.S1_x_at CA612009 - - 6e-2 At4g08400 proline-rich extensin-like family protein C.G. S.X.
0.04 2e+0 34 Vitis vinifera 1615469_at CB974963 - - 1e-3 At4g13390 proline-rich extensin-like family protein C.G. S.X.
0.01 2e-1 38 Zea mays Zm.493.1.A1_at BM333846 LIM transcription factor homolog - 5e-23 At1g10200 WLIM1 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0009664 A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage