CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g28540

Gene name AAA-type ATPase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At3g28540 822484 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAV S.X. H.G.
0.71 84.2 At4g23140 828413 CRK6 (CYSTEINE-RICH RLK 6) Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) S.X. H.G.
0.63 78.1 At3g25010 822092 AtRLP41 (Receptor Like Protein 41) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV S.X. H.G.
0.60 75.7 At4g04500 825780 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.56 73.0 At4g13900 3770199 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.50 65.3 At1g35710 840475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.50 65.3 At3g11010 820272 AtRLP34 (Receptor Like Protein 34) F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV S.X. H.G.
0.48 62.5 At2g32680 817828 AtRLP23 (Receptor Like Protein 23) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV S.X. H.G.
0.46 59.8 At4g23150 828414 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.36 43.6 At3g45860 823729 receptor-like protein kinase, putative F:kinase activity;P:defense response;C:endomembrane system;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
246.5 100.0 GSM269812 WT leaf-well watered-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
134.2 99.9 GSM269814 T6 leaf-well watered-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
125.4 99.9 GSM269818 C2 leaf-well watered-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
117.6 99.9 GSM269828 WT leaf-well watered-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
79.4 99.9 E-MEXP-509-raw-cel-829148666
63.0 99.8 GSM128683 Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
56.5 99.8 GSM131538 ATGE_25_B GSE5630 AtGenExpress: Developmental series (leaves)
53.5 99.8 GSM131537 ATGE_25_A GSE5630 AtGenExpress: Developmental series (leaves)
50.1 99.8 GSM269815 T6 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
49.9 99.8 GSM269826 C2 leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.63 6e-128 458 At3g28510 822481 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV C.G. S.X.
0.69 6e-128 458 At3g28520 822482 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion;BOMFPAV C.G. S.X.
0.36 1e-58 228 At3g28560 822486 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
0.27 1e-24 115 At3g28580 822488 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to abscisic acid stimulus;C:endoplasmic reticulum;OMBFPAV C.G. S.X.
0.24 1e-20 101 At5g40010 833998 AATP1 (AAA-ATPase 1) F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV C.G. S.X.
0.19 1e-8 61 At3g28570 822487 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAV C.G. S.X.
0.06 3e-6 54 At3g28600 822490 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation;C:endomembrane system;BOMFPAV C.G. S.X.
0.11 5e-5 50 At5g40000 833997 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:endomembrane system;BOMFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-5 52 Glycine max GmaAffx.2047.1.S1_at CA801759 - - 2e-14 At3g28570 AAA-type ATPase family protein C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig18966_at Contig18966 - - 3e-1 At4g09840 unknown protein C.G. S.X.
0.02 4e-1 38 Oryza sativa Os03g0802600 9631.m05785 - AAA ATPase, central region domain containingprotein 1e-2 At5g17760 AAA-type ATPase family protein C.G. S.X.
0.19 1e-9 65 Populus trichocarpa PtpAffx.203959.1.S1_s_at pmrna7812 hypothetical protein - 1e-17 At3g28580 AAA-type ATPase family protein C.G. S.X.
0.02 8e-1 36 Triticum aestivum Ta.14595.2.A1_at CA669850 - - 3e-3 At3g28510 AAA-type ATPase family protein C.G. S.X.
0.04 6e-2 38 Vitis vinifera 1614635_at CF519142 hypothetical protein LOC100250791 - 8e-2 At3g28540 AAA-type ATPase family protein C.G. S.X.
0.02 8e-2 38 Zea mays Zm.7621.2.S1_at BE056959 Hypothetical protein LOC100193790 - 1e-1 At5g26070 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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