CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g28500

Gene name 60S acidic ribosomal protein P2 (RPP2C)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.30 32.1 At3g28500 822480 60S acidic ribosomal protein P2 (RPP2C) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, plasma membrane;MFOPAB S.X. H.G.
0.78 88.6 At3g04960 819656 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.74 86.1 At4g21590 828245 ENDO3 (endonuclease 3) Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development. S.X. H.G.
0.71 84.2 At3g02310 821151 SEP2 (SEPALLATA 2) MADS-box protein, binds K domain of AG in vivo S.X. H.G.
0.67 81.6 At1g02190 839541 CER1 protein, putative F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOPFMV S.X. H.G.
0.63 78.1 At1g24260 839040 SEP3 (SEPALLATA3) Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif. S.X. H.G.
0.61 76.7 At5g15800 831436 SEP1 (SEPALLATA1) Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3. S.X. H.G.
0.60 75.7 At1g16705 838241 p300/CBP acetyltransferase-related protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.56 73.0 At4g00870 827990 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO S.X. H.G.
0.50 65.3 At1g03170 839563 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
82.7 99.9 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
55.8 99.8 GSM270865 Arabidopsis cell culture, 4 h_control_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
55.2 99.8 GSM270814 Arabidopsis cell culture, 4 h_control_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
52.5 99.8 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
46.4 99.8 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
38.5 99.8 GSM270868 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
35.8 99.7 GSM131683 ATGE_52_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
32.7 99.7 GSM131671 ATGE_48_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
31.4 99.7 GSM131661 ATGE_29_A2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
30.6 99.7 GSM131682 ATGE_52_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.35 1e-17 89 At5g40040 834001 60S acidic ribosomal protein P2 (RPP2E) F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MPFOAB C.G. S.X.
0.03 7e-4 44 At5g56460 835747 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.02 7e-1 34 At5g43060 834321 cysteine proteinase, putative / thiol protease, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:response to salt stress;C:vacuole;MOPVBAF C.G. S.X.
0.02 7e-1 34 At5g02900 831752 CYP96A13 member of CYP96A C.G. S.X.
0.05 7e-1 34 At5g42060 834211 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P C.G. S.X.
0.05 7e-1 34 At4g30500 829173 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP C.G. S.X.
0.01 7e-1 34 At2g08986 815431 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFV C.G. S.X.
0.01 7e-1 34 At2g42510 818851 - F:molecular_function unknown;P:spliceosome assembly, nuclear mRNA splicing, via spliceosome;C:cellular_component unknown;OMBPFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-2 40 Glycine max GmaAffx.43928.1.S1_at CD406906 - - 8e-29 At5g65930 ZWI (ZWICHEL) C.G. S.X.
0.04 1e+0 32 Hordeum vulgare Contig159_at Contig159 - - 8e-17 At5g59690 histone H4 C.G. S.X.
0.04 1e+0 34 Oryza sativa OsAffx.24745.1.S1_at - - - 0 C.G. S.X.
0.09 9e-1 34 Populus trichocarpa PtpAffx.209545.1.S1_at pmrna18911 hypothetical protein - 4e-8 At2g27720 60S acidic ribosomal protein P2 (RPP2A) C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.82949.1.S1_at CA664497 - - 2e-1 At2g45430 DNA-binding protein-related C.G. S.X.
0.04 1e-2 38 Vitis vinifera 1621877_at CB922518 hypothetical protein LOC100241998 - 6e-6 At3g44590 60S acidic ribosomal protein P2 (RPP2D) C.G. S.X.
0.04 1e+0 32 Zea mays Zm.4127.1.A1_at AI855047 hypothetical protein LOC100216901 - 4e+0 At4g11980 ATNUDX14 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 14) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006414 The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
03010 Ribosome
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