CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g28480

Gene name oxidoreductase, 2OG-Fe(II) oxygenase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.47 61.2 At3g28480 822478 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:Golgi apparatus, plasma membrane;MOPBFV S.X. H.G.
0.44 57.2 At4g29810 829103 ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2. S.X. H.G.
0.44 57.2 At5g27830 832845 - F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;MOP S.X. H.G.
0.33 38.1 At2g40600 818655 appr-1-p processing enzyme family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BMVOAFP S.X. H.G.
0.29 30.3 At3g03560 821235 unknown protein F:unknown;P:unknown;C:plasma membrane;POBMA S.X. H.G.
0.25 22.6 At3g26600 822269 ARO4 (ARMADILLO REPEAT ONLY 4) Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.4 99.8 GSM270814 Arabidopsis cell culture, 4 h_control_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
35.2 99.7 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
26.4 99.7 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
25.2 99.6 GSM270868 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
23.8 99.6 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
22.6 99.6 E-MEXP-509-raw-cel-829148666
22.5 99.6 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
17.1 99.5 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.9 99.5 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
14.4 99.4 GSM134457 St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.77 3e-156 551 At3g28490 822479 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:endomembrane system;MOPBFV C.G. S.X.
0.10 1e-4 48 At5g18900 832008 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:nucleus, cytoplasm;MOPBFV C.G. S.X.
0.01 3e-2 40 At5g57990 835910 UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23) Encodes a ubiquitin-specific protease. C.G. S.X.
0.02 3e-2 40 At2g42320 818833 nucleolar protein gar2-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA C.G. S.X.
0.01 5e-1 36 At5g44700 834499 GSO2 (GASSHO 2) Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis. C.G. S.X.
0.07 5e-1 36 At5g66060 836738 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFV C.G. S.X.
0.00 5e-1 36 At1g80070 844347 SUS2 (ABNORMAL SUSPENSOR 2) a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality. C.G. S.X.
0.00 2e+0 34 At5g44800 834510 CHR4 (CHROMATIN REMODELING 4) F:in 7 functions;P:chromatin assembly or disassembly, regulation of transcription;C:chromatin, nucleus;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 7e-10 65 Glycine max GmaAffx.13138.1.S1_at BF596324 - - 3e-10 At3g28480 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.03 1e-2 40 Hordeum vulgare Contig5486_at Contig5486 - - 4e-2 At3g28480 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.10 1e-2 42 Oryza sativa Os03g0803500 AK059759.1 - 2OG-Fe(II) oxygenase domain containing protein 6e-7 At3g28490 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.37 1e-23 111 Populus trichocarpa PtpAffx.43869.2.A1_a_at CV254605 oxidoreductase, 2OG-Fe(II) oxygenase family protein - 9e-24 At3g28480 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.05 2e+0 34 Triticum aestivum Ta.20981.1.S1_at CA645417 - - 2e-7 At4g33910 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.22 5e-23 107 Vitis vinifera 1621026_at CF519288 hypothetical protein LOC100242241 - 1e-22 At3g28480 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.10 3e+0 32 Zea mays Zm.8922.1.S1_a_at BM080861 hypothetical protein AY109606 /// hypothetical protein LOC100193893 /// hypothetical protein LOC100193935 - 2e-1 At5g47170 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0018401 The posttranslational modification of peptidyl-proline to form 4-hydroxy-L-proline; catalyzed by procollagen-proline,2-oxoglutarate-4-dioxygenase.
L GO:0019538 The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00330 Arginine and proline metabolism
01100 Metabolic pathways
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