CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g28390

Gene name PGP18 (P-GLYCOPROTEIN 18)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At3g28390 822468 PGP18 (P-GLYCOPROTEIN 18) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV S.X. H.G.
0.95 97.0 At2g23410 816873 ACPT (Arabidopsis cis-prenyltransferase) encodes cis-prenyltransferase S.X. H.G.
0.95 97.0 At2g32620 817822 ATCSLB02 encodes a gene similar to cellulose synthase S.X. H.G.
0.95 97.0 At5g15940 831451 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA S.X. H.G.
0.92 96.0 At2g32610 817821 ATCSLB01 encodes a gene similar to cellulose synthase S.X. H.G.
0.91 95.6 At4g15300 827196 CYP702A2 a member of the cytochrome P450 gene family. molecular function unknown. S.X. H.G.
0.91 95.6 At4g15370 827203 BARS1 (BARUOL SYNTHASE 1) Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings. S.X. H.G.
0.91 95.6 At1g47600 841169 BGLU34 (BETA GLUCOSIDASE 34) Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change. S.X. H.G.
0.91 95.6 At4g22640 828360 - F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.90 95.1 At1g06090 837118 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
297.3 100.0 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
246.9 100.0 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
228.0 100.0 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
214.8 100.0 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
179.7 100.0 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
158.7 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
158.7 99.9 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
158.0 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
145.7 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
143.9 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.81 0 1645 At3g28380 822467 PGP17 (P-GLYCOPROTEIN 17) F:ATPase activity, coupled to transmembrane movement of substances, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:transport;C:plasma membrane;BOMAFPV C.G. S.X.
0.78 0 1540 At3g28360 822465 PGP16 (P-GLYCOPROTEIN 16) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV C.G. S.X.
0.78 0 1237 At3g28415 822471 P-glycoprotein, putative F:ATPase activity, coupled to transmembrane movement of substances, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:transport;C:plasma membrane, membrane;BOMAFPV C.G. S.X.
0.59 4e-137 490 At3g28345 822463 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV C.G. S.X.
0.04 3e-8 61 At5g46540 834697 PGP7 (P-GLYCOPROTEIN 7) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV C.G. S.X.
0.01 3e-5 52 At3g62150 825388 PGP21 (P-GLYCOPROTEIN 21) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV C.G. S.X.
0.03 3e-5 52 At1g02520 839353 PGP11 (P-GLYCOPROTEIN 11) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV C.G. S.X.
0.02 1e-4 50 At1g27940 839687 PGP13 (P-GLYCOPROTEIN 13) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-2 42 Glycine max GmaAffx.29126.1.S1_at BU763242 - - 8e-8 At3g28380 PGP17 (P-GLYCOPROTEIN 17) C.G. S.X.
0.01 4e+0 34 Hordeum vulgare bags32b18_at bags32b18 - - 3e-1 At1g62301 unknown protein C.G. S.X.
0.03 6e-5 52 Oryza sativa Os02g0189800 9630.m00884 - ABC transporter related domain containing protein 5e-3 At3g28415 P-glycoprotein, putative C.G. S.X.
0.15 2e-22 109 Populus trichocarpa PtpAffx.213944.1.S1_at pmrna27186 multidrug/pheromone exporter, MDR family, ABC transporter family - 6e-22 At3g28345 ABC transporter family protein C.G. S.X.
0.01 5e-1 38 Triticum aestivum TaAffx.48205.1.S1_at CA745394 - - 5e-1 At3g47500 CDF3 (CYCLING DOF FACTOR 3) C.G. S.X.
0.01 2e-3 44 Vitis vinifera 1621150_at CF516004 hypothetical protein LOC100248338 - 1e-8 At5g39040 ATTAP2 C.G. S.X.
0.01 8e-1 36 Zea mays Zm.7788.1.A1_at CK347752 anthocyanidin 3-O-glucosyltransferase - 9e-1 At3g24093 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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