CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g28270

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g28270 822453 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOAFV S.X. H.G.
0.57 73.8 At5g67370 836872 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP S.X. H.G.
0.35 41.6 At5g24150 832480 SQP1 squalene monooxygenase gene homolog S.X. H.G.
0.20 14.4 At4g09350 826517 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV S.X. H.G.
0.08 2.3 At1g23740 838984 oxidoreductase, zinc-binding dehydrogenase family protein F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to cold;C:in 6 components;BOFMPAV S.X. H.G.
0.07 1.9 At5g43850 834407 ARD4 F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
209.8 100.0 GSM131327 AtGen_6-3611_Saltstress-Shoots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
203.6 100.0 GSM131328 AtGen_6-3612_Saltstress-Shoots-24.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
184.5 100.0 GSM268251 WT-drought-2, biological rep 2 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
182.4 100.0 GSM268249 dor-drought-2, biological rep 2 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
158.6 99.9 GSM131304 AtGen_6-2612_Osmoticstress-Shoots-24.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
120.0 99.9 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
115.0 99.9 GSM131299 AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
93.4 99.9 E-MEXP-449-raw-cel-676423253
84.6 99.9 GSM131300 AtGen_6-2512_Osmoticstress-Shoots-12.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
68.2 99.9 E-MEXP-449-raw-cel-676423218
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 2e-6 54 At3g28310 822458 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.04 9e-6 52 At3g28320 822460 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
0.03 9e-3 42 At5g66660 836798 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO C.G. S.X.
0.10 4e-2 40 At3g28290 822455 AT14A Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed. C.G. S.X.
0.10 4e-2 40 At3g28300 822457 AT14A Possesses a transmembrane domain and a small region that has sequence similarities to integrins from fungi, insects and humans. Is localized to plasma membrane and cytoplasm. C.G. S.X.
0.01 1e-1 38 At5g11470 831018 DNA binding / nucleic acid binding F:DNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOPFBV C.G. S.X.
0.03 1e-1 38 At1g54217 2745829 Expressed protein F:molecular_function unknown;P:biological_process unknown;C:membrane;P C.G. S.X.
0.02 6e-1 36 At5g22140 832275 pyridine nucleotide-disulphide oxidoreductase family protein F:electron carrier activity, oxidoreductase activity, FAD binding;P:unknown;C:plasma membrane;BOFAMP C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max PsAffx.psHB040xF22f_s_at PsAffx.psHB040xF22f - - 1e+1 At5g05360 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HT12A14r_at HT12A14r - - 6e-1 At3g28270 - C.G. S.X.
0.03 4e+0 34 Oryza sativa OsAffx.5352.1.S1_at - - - 0 C.G. S.X.
0.03 8e-1 36 Populus trichocarpa PtpAffx.223399.1.S1_at pmrna41381 hypothetical protein - 7e-11 At5g51280 DEAD-box protein abstrakt, putative C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.57082.1.S1_at CA637040 - - 4e+0 At5g55508 unknown protein C.G. S.X.
0.02 1e+1 30 Vitis vinifera 1622804_at CB035779 - - 2e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.02 2e-1 36 Zea mays Zm.747.1.A1_at CF627612 hypothetical protein LOC100191588 - 3e-22 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage