CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g28210

Gene name PMZ

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.39 48.4 At3g28210 822447 PMZ Encodes a putative zinc finger protein (PMZ). S.X. H.G.
0.57 73.8 At3g12580 820438 HSP70 (heat shock protein 70) F:ATP binding;P:in 8 processes;C:cytosol, mitochondrion, cell wall, plasma membrane;OBMFPVA S.X. H.G.
0.55 70.6 At5g52640 835341 ATHSP90.1 (HEAT SHOCK PROTEIN 90.1) Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. S.X. H.G.
0.40 50.8 At3g09350 820091 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.33 38.1 At5g25450 832619 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;MPFO S.X. H.G.
0.09 2.8 At2g40340 818627 AP2 domain-containing transcription factor, putative (DRE2B) encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
354.3 100.0 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
251.8 100.0 GSM270868 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
244.5 100.0 E-MEXP-1443-raw-cel-1581869632
225.0 100.0 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
221.1 100.0 E-MEXP-1443-raw-cel-1581869921
167.4 100.0 E-MEXP-1443-raw-cel-1581869863
135.7 99.9 E-MEXP-1443-raw-cel-1581869688
100.9 99.9 E-MEXP-739-raw-cel-1099467393
100.0 99.9 E-MEXP-449-raw-cel-676423362
96.3 99.9 E-MEXP-739-raw-cel-1099467384
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-2 40 At3g51320 824295 - F:unknown;P:biological_process unknown;C:unknown;POMF C.G. S.X.
0.03 3e-1 36 At5g57640 835869 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPFVB C.G. S.X.
0.04 3e-1 36 At4g02040 828161 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.01 3e-1 36 At1g01900 839318 SBTI1.1 Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide. C.G. S.X.
0.02 1e+0 34 At5g48800 834938 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;P C.G. S.X.
0.01 1e+0 34 At3g08570 820004 protein binding / signal transducer F:protein binding, signal transducer activity;P:response to light stimulus;C:chloroplast;PM C.G. S.X.
0.01 1e+0 34 At1g55820 842032 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV C.G. S.X.
0.02 1e+0 34 At1g56440 842097 serine/threonine protein phosphatase-related F:binding;P:biological_process unknown;C:cellular_component unknown;MOBPFA C.G. S.X.
0.01 1e+0 34 At1g17220 838293 FUG1 (fu-gaeri1) Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 4e-4 46 Glycine max GmaAffx.90047.1.S1_s_at CF805772 - - 3e-4 At3g28210 PMZ C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig7210_at Contig7210 - - 1e+0 At5g19190 unknown protein C.G. S.X.
0.04 1e-1 38 Oryza sativa Os03g0413400 BX899056 - Glycosyl transferase, family 8 protein 2e-1 At2g22640 BRK1 (BRICK1) C.G. S.X.
0.11 4e-7 56 Populus trichocarpa PtpAffx.132656.1.A1_at CV255895 hypothetical protein - 3e-7 At3g28210 PMZ C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.32078.1.S1_at CA601377 - - 2e-1 At3g45910 unknown protein C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1616119_at CB340160 hypothetical protein LOC100261898 - 1e+0 At3g28210 PMZ C.G. S.X.
0.03 5e-1 34 Zea mays Zm.16992.1.A1_at CO528153 hypothetical protein LOC100279570 - 1e+0 At3g28210 PMZ C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
X GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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