CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g28180

Gene name ATCSLC04 (CELLULOSE-SYNTHASE LIKE C4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g28180 822444 ATCSLC04 (CELLULOSE-SYNTHASE LIKE C4) encodes a gene similar to cellulose synthase S.X. H.G.
0.60 75.7 At3g28200 822446 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB S.X. H.G.
0.58 73.8 At4g26690 828776 SHV3 (SHAVEN 3) Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. S.X. H.G.
0.47 61.2 At1g61100 842403 disease resistance protein (TIR class), putative F:unknown;P:defense response;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.40 50.8 At2g25800 817122 - F:unknown;P:biological_process unknown;C:unknown;POMFB S.X. H.G.
0.40 50.8 At3g11700 820342 FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR) F:molecular_function unknown;P:response to cyclopentenone, cell adhesion;C:vacuole;BPOM S.X. H.G.
0.35 41.6 At5g66200 836752 ARO2 (ARMADILLO REPEAT ONLY 2) Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules. S.X. H.G.
0.32 35.7 At4g32410 829376 CESA1 (CELLULOSE SYNTHASE 1) Encodes a cellulose synthase isomer. CESA1 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA1, along with CESA3 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. lasma membrane complex for cellulose biosynthesis. S.X. H.G.
0.32 35.7 At4g27720 828886 - F:unknown;P:unknown;C:plasma membrane;BPMOFA S.X. H.G.
0.31 33.8 At5g05170 830399 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
83.3 99.9 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
77.4 99.9 GSM270865 Arabidopsis cell culture, 4 h_control_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
55.6 99.8 GSM270814 Arabidopsis cell culture, 4 h_control_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
28.6 99.7 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
16.5 99.5 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
16.2 99.5 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
15.2 99.4 GSM226269 WT(Ler)_Dark_replicate3 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
14.4 99.4 GSM184499 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.7 99.3 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
12.5 99.3 E-MEXP-98-raw-cel-320189079
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 1e-15 85 At4g31590 829286 ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5) encodes a gene similar to cellulose synthase C.G. S.X.
0.20 2e-14 81 At4g07960 826301 ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12) encodes a gene similar to cellulose synthase C.G. S.X.
0.19 7e-11 69 At2g24630 816999 ATCSLC08 encodes a gene similar to cellulose synthase C.G. S.X.
0.13 4e-9 63 At3g07330 819921 ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6) encodes a gene similar to cellulose synthase C.G. S.X.
0.05 2e-8 61 At5g03760 831734 ATCSLA09 encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root. C.G. S.X.
0.04 3e-7 57 At4g13410 826972 ATCSLA15 encodes a gene similar to cellulose synthase C.G. S.X.
0.02 3e-4 48 At5g16190 831477 ATCSLA11 encodes a gene similar to cellulose synthase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 2e-39 165 Glycine max GmaAffx.41397.2.S1_at AW595946 - - 8e-40 At3g28180 ATCSLC04 (CELLULOSE-SYNTHASE LIKE C4) C.G. S.X.
0.28 6e-22 105 Hordeum vulgare Contig7541_s_at Contig7541 - - 5e-30 At4g07960 ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12) C.G. S.X.
0.19 3e-18 95 Oryza sativa Os03g0770800 AF435641.1 - CSLC9 4e-19 At4g07960 ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12) C.G. S.X.
0.26 3e-20 101 Populus trichocarpa PtpAffx.214284.1.S1_at pmrna27785 hypothetical protein - 2e-175 At4g31590 ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5) C.G. S.X.
0.21 2e-17 91 Triticum aestivum Ta.7192.1.S1_at CK208409 - - 7e-26 At2g24630 ATCSLC08 C.G. S.X.
0.01 8e-2 38 Vitis vinifera 1620702_a_at CF518993 hypothetical protein LOC100263185 - 3e-4 At2g32150 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.14 1e-16 87 Zea mays Zm.3030.1.A1_at CA402193 - - 2e-12 At4g31590 ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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