Gene omics information

Query gene ID At3g27700
Gene name RNA recognition motif (RRM)-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3846.7At3g27700822392RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OMBFPVAS.X.H.G.
0.6075.7At2g41710818770ovule development protein, putativeF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POBVS.X.H.G.
0.5773.8At5g62640836385proline-rich family proteinnuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLCS.X.H.G.
0.5673.0At3g13445820546TBP1 (TATA BINDING PROTEIN 1)TBP (TATA binding protein) associates with TAF(II)s (TBP-associated factors) to form the TFIID general transcription factor complexS.X.H.G.
0.5065.3At5g40190834017calmodulin-binding proteinIdentified in a screen for calmodulin-binding proteins obtained from an auxin treated cDNA library.S.X.H.G.
0.3338.1At3g06660819851PAPA-1-like family protein / zinc finger (HIT type) family proteinF:protein binding;P:unknown;C:chloroplast;OMFBPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
429.7100.0GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
177.9100.0GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
135.599.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
91.399.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
45.799.8GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
41.099.8GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.699.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.399.4GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.399.4GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
12.199.3GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-138At5g52460835322EDA41 (embryo sac development arrest 41)F:unknown;P:polar nucleus fusion;C:cellular_component unknown;PC.G.S.X.
0.013e-138At4g01080827902unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
0.013e-138At3g05340819698pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFC.G.S.X.
0.013e-138At3g53710824538AGD6A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.C.G.S.X.
0.013e-138At1g25054839094UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylaseF:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity;P:lipid A biosynthetic process;C:unknown;OBPC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.071e-29133Glycine maxGmaAffx.90978.1.S1_atCF806703--2e-30At3g27700RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.013e+034Hordeum vulgareHVSMEg0013I19r2_s_atHVSMEg0013I19r2--2e-1At3g06330zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.052e-1069Oryza sativaOs04g0394300AK111819.1-The start codon is not identified.1e-10At3g27700RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.121e-29133Populus trichocarpaPtpAffx.213873.1.S1_atpmrna27059hypothetical protein-7e-30At3g27700RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.019e-240Triticum aestivumTaAffx.26128.1.S1_atCA691700--8e-1At2g26930ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE)C.G.S.X.
0.014e-136Vitis vinifera1611502_atCB913863--7e-14At3g14180transcription factorC.G.S.X.
0.016e-136Zea maysZmAffx.498.1.A1_atAI691679--3e+0At4g30730unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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