CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g27660

Gene name OLEO4 (OLEOSIN 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.47 61.2 At3g27660 822388 OLEO4 (OLEOSIN 4) Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798. S.X. H.G.
0.91 95.6 At4g27140 828822 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PMO S.X. H.G.
0.91 95.6 At4g27160 828824 AT2S3 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO S.X. H.G.
0.89 94.6 At4g27150 828823 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO S.X. H.G.
0.89 94.6 At4g27170 828825 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO S.X. H.G.
0.80 89.8 At1g03880 839383 CRU2 (CRUCIFERIN 2) Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
213.6 100.0 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
213.2 100.0 E-ATMX-1-raw-cel-1112746267
190.4 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
184.1 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
183.2 100.0 E-ATMX-1-raw-cel-1112746209
183.1 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
181.8 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
175.9 100.0 GSM10451 WT Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
175.8 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
171.6 100.0 E-ATMX-1-raw-cel-1112746095
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.21 1e-9 63 At5g40420 834040 OLEO2 (OLEOSIN 2) Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. C.G. S.X.
0.01 3e-1 36 At5g40640 834063 unknown protein F:unknown;P:unknown;C:plasma membrane;PMO C.G. S.X.
0.03 3e-1 36 At1g17640 838341 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBPOFVA C.G. S.X.
0.01 1e+0 34 At5g25590 832634 - F:unknown;P:N-terminal protein myristoylation;C:unknown;MOFPBVA C.G. S.X.
0.01 1e+0 34 At4g31920 829322 ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10) Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. C.G. S.X.
0.01 1e+0 34 At3g06400 819814 CHR11 (CHROMATIN-REMODELING PROTEIN 11) Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature. C.G. S.X.
0.02 1e+0 34 At1g26110 839152 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOFVA C.G. S.X.
0.04 4e+0 32 At5g17870 831655 PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6) plastid-specific ribosomal protein 6 precursor (Psrp-6) - like C.G. S.X.
0.01 4e+0 32 At5g56010 835699 HSP81-3 a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-1 38 Glycine max GmaAffx.68456.3.S1_at BU089772 - - 4e-2 At3g27660 OLEO4 (OLEOSIN 4) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare EBro08_SQ003_C15_at EBro08_SQ003_C15 - - 2e-2 At3g21850 ASK9 (ARABIDOPSIS SKP1-LIKE 9) C.G. S.X.
0.02 6e-1 36 Oryza sativa Os08g0509500 AK068450.1 - D111/G-patch domain containing protein 2e-10 At3g57910 D111/G-patch domain-containing protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.214567.1.S1_at pmrna28299 hypothetical protein - 1e+0 At5g65220 ribosomal protein L29 family protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.109024.1.S1_at CA681111 - - 3e+0 At1g67856 protein binding / zinc ion binding C.G. S.X.
0.03 5e-3 40 Vitis vinifera 1614697_at CB346214 hypothetical protein LOC100255962 - 5e+0 At5g07550 GRP19 (GLYCINE-RICH PROTEIN 19) C.G. S.X.
0.02 2e+0 32 Zea mays Zm.12546.1.A1_at AY104987.1 ATP binding protein - 2e+0 At3g43440 JAZ11 (JASMONATE-ZIM-DOMAIN PROTEIN 11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009845 The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis.
X GO:0010344 The cellular process by which an seed oilbody is synthesized, aggregates, and bonds together. Seed oilbodies are simple organelles comprising a matrix of triglyceride surrounded by a phospholipid monolayer embedded and covered with unique proteins called oleosins. Seed oilbodies supply the energy requirements for the growth of the seedling after germination.
X GO:0050826 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a freezing stimulus, temperatures below 0 degrees Celsius.
C GO:0019915 The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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