CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g27650

Gene name LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At3g27650 822387 LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) F:unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At1g78815 844218 LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM S.X. H.G.
0.67 81.6 At5g63580 836477 FLS2 (FLAVONOL SYNTHASE 2) encodes a protein whose sequence is similar to flavonol synthase S.X. H.G.
0.40 50.8 At5g65040 836628 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.33 38.1 At5g03680 831757 PTL (PETAL LOSS) Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
243.9 100.0 GSM142639 MC002_ATH1_A6.2-dubos-5kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
224.5 100.0 E-MEXP-1138-raw-cel-1432773130
222.5 100.0 GSM142633 MC002_ATH1_A4.2-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
171.0 100.0 GSM142640 MC002_ATH1_A6.3-dubos-5kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
145.6 99.9 GSM142634 MC002_ATH1_A4.3-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
118.8 99.9 GSM142638 MC002_ATH1_A6.1-dubos-5kc_repeat GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
118.5 99.9 GSM75517 slr-1 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
115.3 99.9 E-MEXP-1138-raw-cel-1432773098
110.4 99.9 GSM142628 MC002_ATH1_A2.3-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
104.1 99.9 GSM142626 MC002_ATH1_A2.1-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 6e-5 48 At1g65620 842873 AS2 (ASYMMETRIC LEAVES 2) required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP. C.G. S.X.
0.06 9e-1 34 Atcg00080 - - PSII I protein C.G. S.X.
0.04 9e-1 34 At2g23660 816897 LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10) F:unknown;P:biological_process unknown;C:unknown;PMBOF C.G. S.X.
0.02 9e-1 34 At1g28690 839769 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA C.G. S.X.
0.02 4e+0 32 At5g10710 830936 protein binding F:protein binding;P:chromosome segregation, cell division;C:chromosome, centromeric region, nucleus;PM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max Gma.14191.1.A1_at CD399544 - - 1e+0 At4g30070 LCR59 (Low-molecular-weight cysteine-rich 59) C.G. S.X.
0.04 2e+0 32 Hordeum vulgare EBpi01_SQ005_J09_s_at EBpi01_SQ005_J09 - - 2e-1 At2g29490 ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1) C.G. S.X.
0.05 5e-1 36 Oryza sativa OsAffx.25472.1.S1_at - - - 0 C.G. S.X.
0.16 2e-5 50 Populus trichocarpa PtpAffx.133584.1.A1_at CV270143 hypothetical protein - 3e-5 At3g27650 LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) C.G. S.X.
0.06 4e+0 32 Triticum aestivum TaAffx.59596.1.S1_at CA598254 - - 5e+0 At2g41082 unknown protein C.G. S.X.
0.06 7e-2 36 Vitis vinifera 1619554_at CF513781 hypothetical protein LOC100267218 - 2e-21 At5g63090 LOB (LATERAL ORGAN BOUNDARIES) C.G. S.X.
0.03 6e+0 30 Zea mays Zm.6781.1.A1_at AI619357 Growth-regulating factor 8-like - 9e-1 At1g22750 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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