Gene omics information

Query gene ID At3g27650
Gene name LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3338.1At3g27650822387LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)F:unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6781.6At1g78815844218LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMS.X.H.G.
0.6781.6At5g63580836477FLS2 (FLAVONOL SYNTHASE 2)encodes a protein whose sequence is similar to flavonol synthaseS.X.H.G.
0.4050.8At5g65040836628senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3338.1At5g03680831757PTL (PETAL LOSS)Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
243.9100.0GSM142639MC002_ATH1_A6.2-dubos-5kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
224.5100.0E-MEXP-1138-raw-cel-1432773130
222.5100.0GSM142633MC002_ATH1_A4.2-dubos-6kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
171.0100.0GSM142640MC002_ATH1_A6.3-dubos-5kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
145.699.9GSM142634MC002_ATH1_A4.3-dubos-6kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
118.899.9GSM142638MC002_ATH1_A6.1-dubos-5kc_repeatGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
118.599.9GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
115.399.9E-MEXP-1138-raw-cel-1432773098
110.499.9GSM142628MC002_ATH1_A2.3-dubos-wtcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
104.199.9GSM142626MC002_ATH1_A2.1-dubos-wtcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.076e-548At1g65620842873AS2 (ASYMMETRIC LEAVES 2)required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.C.G.S.X.
0.069e-134Atcg00080--PSII I proteinC.G.S.X.
0.049e-134At2g23660816897LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10)F:unknown;P:biological_process unknown;C:unknown;PMBOFC.G.S.X.
0.029e-134At1g28690839769pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.024e+032At5g10710830936protein bindingF:protein binding;P:chromosome segregation, cell division;C:chromosome, centromeric region, nucleus;PMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e+034Glycine maxGma.14191.1.A1_atCD399544--1e+0At4g30070LCR59 (Low-molecular-weight cysteine-rich 59)C.G.S.X.
0.042e+032Hordeum vulgareEBpi01_SQ005_J09_s_atEBpi01_SQ005_J09--2e-1At2g29490ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)C.G.S.X.
0.055e-136Oryza sativaOsAffx.25472.1.S1_at---0C.G.S.X.
0.162e-550Populus trichocarpaPtpAffx.133584.1.A1_atCV270143hypothetical protein-3e-5At3g27650LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)C.G.S.X.
0.064e+032Triticum aestivumTaAffx.59596.1.S1_atCA598254--5e+0At2g41082unknown proteinC.G.S.X.
0.067e-236Vitis vinifera1619554_atCF513781hypothetical protein LOC100267218-2e-21At5g63090LOB (LATERAL ORGAN BOUNDARIES)C.G.S.X.
0.036e+030Zea maysZm.6781.1.A1_atAI619357Growth-regulating factor 8-like-9e-1At1g22750unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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