CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g27400

Gene name pectate lyase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At3g27400 822361 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.71 84.2 At2g20800 816609 NDB4 (NAD(P)H dehydrogenase B4) F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM S.X. H.G.
0.71 84.2 At1g36240 840530 60S ribosomal protein L30 (RPL30A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPB S.X. H.G.
0.71 84.2 At2g04000 814926 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.67 81.6 At1g22090 838814 emb2204 (embryo defective 2204) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At5g11410 831012 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.57 73.8 At1g33450 840238 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.50 65.3 At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
313.3 100.0 GSM270814 Arabidopsis cell culture, 4 h_control_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
258.8 100.0 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
250.8 100.0 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
237.0 100.0 GSM133719 Deeken_A-1-Deeke-Tum_SLD_REP1 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
217.9 100.0 GSM134206 Murray_3-3_D5-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
196.7 100.0 GSM134202 Murray_3-1_D1-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
188.1 100.0 GSM133953 Murray_2-9_T16-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
183.4 100.0 E-ATMX-13-raw-cel-1556149823
152.2 99.9 GSM134204 Murray_3-2_D3-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
136.2 99.9 GSM270865 Arabidopsis cell culture, 4 h_control_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.36 2e-47 190 At1g67750 843100 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO C.G. S.X.
0.32 1e-45 184 At5g63180 836439 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFO C.G. S.X.
0.21 2e-31 137 At4g24780 828580 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFO C.G. S.X.
0.11 9e-28 125 At4g13210 826936 lyase/ pectate lyase F:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;PBFO C.G. S.X.
0.14 3e-24 113 At3g24230 822010 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO C.G. S.X.
0.12 1e-23 111 At3g07010 819886 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO C.G. S.X.
0.09 1e-20 101 At3g24670 822063 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO C.G. S.X.
0.17 5e-20 99 At5g48900 834948 pectate lyase family protein F:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFO C.G. S.X.
0.10 7e-16 85 At5g04310 830310 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 6e-51 202 Glycine max GmaAffx.13717.1.S1_at BI316021 - - 2e-63 At5g63180 pectate lyase family protein C.G. S.X.
0.08 2e-18 93 Hordeum vulgare Contig11004_at Contig11004 - - 3e-22 At3g07010 pectate lyase family protein C.G. S.X.
0.07 4e-25 117 Oryza sativa Os04g0137100 AK060609.1 - Pectate lyase (Fragment) 8e-6 At3g07010 pectate lyase family protein C.G. S.X.
0.31 8e-29 129 Populus trichocarpa PtpAffx.200992.1.S1_s_at pmrna1952 hypothetical protein - 7e-29 At3g27400 pectate lyase family protein C.G. S.X.
0.07 1e-8 61 Triticum aestivum Ta.11160.1.S1_s_at BQ169530 - - 5e-14 At3g07010 pectate lyase family protein C.G. S.X.
0.20 7e-41 167 Vitis vinifera 1607945_at AF243475.1 pectate lyase - 1e-39 At1g67750 pectate lyase family protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.11990.1.A1_at BM382449 - - 8e+0 At5g23830 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00421 Polysaccharide lyases

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00040 Pentose and glucuronate interconversions
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