CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g27290

Gene name F-box family protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At3g27290 822348 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.57 73.8 At2g23660 816897 LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10) F:unknown;P:biological_process unknown;C:unknown;PMBOF S.X. H.G.
0.57 73.8 At5g24560 832527 AtPP2-B12 (Phloem protein 2-B12) F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.50 65.3 At2g33240 817886 XID member of Myosin-like proteins S.X. H.G.
0.36 43.6 At1g18750 838457 AGL65 (AGAMOUS-LIKE 65) Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
630.9 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
193.4 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
173.1 100.0 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
172.3 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
146.7 99.9 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
96.6 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
89.7 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
82.8 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
74.4 99.9 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
73.4 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 9e-3 42 At1g06750 837186 unknown protein F:unknown;P:unknown;C:unknown;POB C.G. S.X.
0.03 6e-1 36 At3g49570 824119 LSU3 (RESPONSE TO LOW SULFUR 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.03 6e-1 36 At2g30020 817553 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity;P:defense response to fungus, response to fungus, response to wounding;C:chloroplast, protein serine/threonine phosphatase complex;MPOFBVA C.G. S.X.
0.01 6e-1 36 At1g24300 839046 - F:unknown;P:unknown;C:chloroplast;OMFPBV C.G. S.X.
0.01 6e-1 36 At1g27430 839633 GYF domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV C.G. S.X.
0.01 6e-1 36 At1g64930 842801 CYP89A7 member of CYP89A C.G. S.X.
0.01 2e+0 34 At5g43730 834393 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA C.G. S.X.
0.01 2e+0 34 At5g43740 834394 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-1 36 Glycine max GmaAffx.60830.1.A1_at BU549510 - - 6e-1 At3g44780 unknown protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HW08J24V_at HW08J24V - - 5e+0 At4g09840 unknown protein C.G. S.X.
0.02 1e+0 36 Oryza sativa Os.46531.2.S1_x_at - - - 0 C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.9920.1.A1_at DN484312 - - 4e+0 At5g48500 unknown protein C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.12906.1.A1_at BJ217854 - - 2e-1 At5g11900 eukaryotic translation initiation factor SUI1 family protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1610768_at CD010664 - - 3e-1 At3g27290 F-box family protein-related C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.1203.1.S1_at BE128869 lipase - 3e-9 At1g10740 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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