CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g27070

Gene name TOM20-1 (translocase outer membrane 20-1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At3g27070 822325 TOM20-1 (translocase outer membrane 20-1) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins S.X. H.G.
1.00 100.0 At5g52710 835348 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.75 86.9 At3g28510 822481 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV S.X. H.G.
0.75 86.9 At5g52690 835346 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P S.X. H.G.
0.57 73.8 At3g13090 820497 ATMRP8 member of MRP subfamily S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
211.5 100.0 GSM184538 Whole roots 2hr KCl control treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
193.5 100.0 GSM184539 Whole roots 2hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
186.8 100.0 GSM184545 Whole roots 2hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
184.2 100.0 GSM184533 Protoplasted root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
115.3 99.9 GSM184536 Protoplasted root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
104.6 99.9 GSM184505 Pericycle root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
104.5 99.9 GSM184535 Protoplasted root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
103.8 99.9 GSM218590 Protoplasted root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
102.8 99.9 GSM218589 Protoplasted root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
92.0 99.9 GSM184507 Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.65 4e-34 145 At3g27080 822326 TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3) Component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteins C.G. S.X.
0.02 3e-1 36 At4g31400 829267 DNA-directed DNA polymerase/ damaged DNA binding F:damaged DNA binding, DNA-directed DNA polymerase activity;P:DNA repair;C:unknown;MFPOB C.G. S.X.
0.01 1e+0 34 At3g13220 820512 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMAFPV C.G. S.X.
0.01 4e+0 32 At5g14610 831313 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding F:protein binding, helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:cellular_component unknown;BMOFPAV C.G. S.X.
0.01 4e+0 32 At5g57590 835863 BIO1 (biotin auxotroph 1) Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase. C.G. S.X.
0.01 4e+0 32 At5g25150 832586 TAF5 (TBP-ASSOCIATED FACTOR 5) Encodes a putative TATA-binding-protein associated factor TAF5. TAFs are subunits of the general transcription factor IID (TFIID). C.G. S.X.
0.01 4e+0 32 At5g47250 834772 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:mitochondrion;PMBOFA C.G. S.X.
0.01 4e+0 32 At4g29750 829097 RNA binding F:RNA binding;P:unknown;C:chloroplast;PMOFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-1 36 Glycine max Gma.3167.1.S1_a_at CD400867 - - 5e-1 At3g27070 TOM20-1 (translocase outer membrane 20-1) C.G. S.X.
0.04 8e+0 30 Hordeum vulgare Contig20608_at Contig20608 - - 9e-3 At1g76040 CPK29 C.G. S.X.
0.05 1e-1 38 Oryza sativa Os01g0921600 9629.m06882 - Mitochondrial import receptor subunit TOM20(Translocase of outer membrane 20 kDa subunit) 2e-1 At1g63105 unknown protein C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.44505.1.A1_at CV229875 hypothetical protein - 8e-1 At3g27070 TOM20-1 (translocase outer membrane 20-1) C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.51592.1.S1_at CA723245 - - 2e+0 At5g01300 phosphatidylethanolamine-binding family protein C.G. S.X.
0.07 1e+0 32 Vitis vinifera 1608368_at CK136894.1 - - 4e-1 At3g27080 TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.6335.1.A1_at AI691439 - - 3e+0 At1g32583 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006626 The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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