Gene omics information

Query gene ID At3g27060
Gene name TSO2 (TSO meaning 'ugly' in Chinese)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.135.8At3g27060822324TSO2 (TSO meaning 'ugly' in Chinese)Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development.S.X.H.G.
0.4050.8At1g63160842620replication factor C 40 kDa, putativeF:in 6 functions;P:DNA replication;C:DNA replication factor C complex;BOMFAPVS.X.H.G.
0.3338.1At1g67630843086POLA2 (DNA POLYMERASE ALPHA 2)F:DNA binding, DNA-directed DNA polymerase activity;P:DNA replication;C:mitochondrion;MFOPS.X.H.G.
0.2014.4At5g49160834975MET1 (METHYLTRANSFERASE 1)Encodes a cytosine methyltransferase MET1. Required for silencing of FWA paternal allele in endosperm. Two lines with RNAi constructs directed against DMT1 have reduced agrobacterium-mediated tumor formation.S.X.H.G.
0.1912.7At1g20220838610nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:plant-type cell wall;MBOPFVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
56.799.8GSM245921csn3-1_mutant_dark replicate 1GSE9728COP9 signalosome (csn) mutant analysis
52.099.8GSM245915csn5 (csn5a-2 csn5b) mutant light replicate 3GSE9728COP9 signalosome (csn) mutant analysis
50.399.8GSM245925csn5 (csn5a-2 csn5b) mutant dark replicate 1GSE9728COP9 signalosome (csn) mutant analysis
47.799.8GSM245926csn5 (csn5a-2 csn5b) mutant dark replicate 2GSE9728COP9 signalosome (csn) mutant analysis
45.299.8GSM245911csn3-1 mutant light replicate 2GSE9728COP9 signalosome (csn) mutant analysis
44.099.8GSM245927csn5 (csn5a-2 csn5b) mutant dark replicate 3GSE9728COP9 signalosome (csn) mutant analysis
41.399.8GSM128756De Veylder_1-8_E2Fa-Dpa_Rep4_ATH1GSE5529Arabidopsis E2F target genes
40.999.8GSM245923csn4-1_mutant_dark replicate 2GSE9728COP9 signalosome (csn) mutant analysis
40.399.8GSM128753De Veylder_1-5_E2Fa-Dpa_Rep1_ATH1GSE5529Arabidopsis E2F target genes
40.199.8GSM245910csn3-1 mutant light replicate 1GSE9728COP9 signalosome (csn) mutant analysis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.069e-961At3g23580821937RNR2A (RIBONUCLEOTIDE REDUCTASE 2A)Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes (RNR2A). Functionally redundant with the ribonucleotide reductase TSO2. mRNA was shown to specifically accumulate during the S-phase of the cell cycle in synchronized tobacco BY2 cells. Critical for cell cycle progression, DNA damage repair and plant development.C.G.S.X.
0.015e-136At4g16745827378exostosin family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PMOBFC.G.S.X.
0.012e+034At5g11700831042glycine-rich proteinF:unknown;P:unknown;C:vacuole;BMOPFVAC.G.S.X.
0.022e+034At5g26110832680ATP binding / catalytic/ protein kinaseF:protein kinase activity, catalytic activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;BOMAFPC.G.S.X.
0.022e+034At4g20890827837TUB9tubulin 9C.G.S.X.
0.012e+034At3g46290823774protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.012e+034At3g09710820128IQD1 (IQ-DOMAIN 1)Ca(2+)-dependent calmodulin-binding protein. Targeted to the nucleus. Involved in glucosinolate metabolism in response to biotic challenge. Expressed in vascular tissue.C.G.S.X.
0.012e+034At1g30700839950FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAC.G.S.X.
0.032e+034At1g08120837331-F:unknown;P:unknown;C:cellular_component unknown;AMOFPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.421e-27125Glycine maxGma.2848.1.S1_atBI967223--1e-27At3g27060TSO2 (TSO meaning 'ugly' in Chinese)C.G.S.X.
0.233e-1065Hordeum vulgareContig4965_atContig4965--9e-10At3g27060TSO2 (TSO meaning 'ugly' in Chinese)C.G.S.X.
0.153e-757Oryza sativaOs06g0127900AK073063.1-Ribonucleoside-diphosphate reductase small chain(EC 1.17.4.1) (Ribonucleotide reductase R2 subunit)2e-7At3g27060TSO2 (TSO meaning 'ugly' in Chinese)C.G.S.X.
0.302e-29131Populus trichocarpaPtp.353.2.S1_a_atBP937010hypothetical protein-7e-30At3g27060TSO2 (TSO meaning 'ugly' in Chinese)C.G.S.X.
0.192e-1273Triticum aestivumTa.1010.1.S1_atBJ284296--4e-12At3g27060TSO2 (TSO meaning 'ugly' in Chinese)C.G.S.X.
0.024e-238Vitis vinifera1618651_atCB005890hypothetical protein LOC100241531-5e-13At5g52960unknown proteinC.G.S.X.
0.202e-23109Zea maysZm.14324.3.A1_x_atAY105596.1hypothetical protein LOC100193273-3e-23At3g27060TSO2 (TSO meaning 'ugly' in Chinese)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0051726Any process that modulates the rate or extent of progression through the cell cycle.
XGO:0012501Cell death resulting from activation of endogenous cellular processes.
XGO:0006260The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.
XGO:0007275The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
SGO:0006281The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
CGO:0009186The chemical reactions and pathways involving a deoxyribonucleoside diphosphate, a glycosamine consisting of a base linked to a deoxyribose sugar esterified with diphosphate on its glycose moiety.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00002Link to KaPPA-View 4Purine metabolism
00122Link to KaPPA-View 4Pyrimidine metabolism



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00230Link to KEGG PATHWAYPurine metabolism
00240Link to KEGG PATHWAYPyrimidine metabolism
00480Link to KEGG PATHWAYGlutathione metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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