CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g26830

Gene name PAD3 (PHYTOALEXIN DEFICIENT 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. S.X. H.G.
0.67 81.6 At1g15520 838122 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots. S.X. H.G.
0.50 65.3 At2g35980 818171 YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast. S.X. H.G.
0.33 38.1 At3g28930 822529 AIG2 (AVRRPT2-INDUCED GENE 2) avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 S.X. H.G.
0.23 19.3 At5g38900 833882 DSBA oxidoreductase family protein F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
110.5 99.9 GSM133029 BC482-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
110.4 99.9 GSM133030 BC482-2 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
97.4 99.9 GSM131160 AtGen_C-10_1-Pi-6_REP1_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
81.2 99.9 GSM131161 AtGen_C-11_2-Pi-6_REP2_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
79.7 99.9 GSM322548 genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep1 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 22 factorial design
77.1 99.9 E-MEXP-546-raw-cel-863289532
77.0 99.9 GSM322550 genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 22 factorial design
71.2 99.9 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
70.7 99.9 GSM322549 genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep2 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
68.3 99.9 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.78 2e-177 623 At1g13090 837866 CYP71B28 putative cytochrome P450 C.G. S.X.
0.39 3e-83 309 At1g13110 837868 CYP71B7 member of CYP71B C.G. S.X.
0.65 2e-69 264 At1g13100 837867 CYP71B29 putative cytochrome P450 C.G. S.X.
0.34 3e-37 157 At3g26210 822222 CYP71B23 putative cytochrome P450 C.G. S.X.
0.13 2e-10 67 At5g35715 833546 CYP71B8 encodes a protein with cytochrome P450 domain C.G. S.X.
0.16 2e-10 67 At3g26220 822223 CYP71B3 cytochrome P450 monooxygenase C.G. S.X.
0.12 8e-10 65 At3g26190 822220 CYP71B21 putative cytochrome P450 C.G. S.X.
0.11 8e-10 65 At3g53300 824497 CYP71B31 putative cytochrome P450 C.G. S.X.
0.12 8e-10 65 At3g44250 823550 CYP71B38 putative cytochrome P450 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 36 Glycine max GmaAffx.5475.1.S1_at BF324498 - - 2e-1 At3g26210 CYP71B23 C.G. S.X.
0.02 4e-1 36 Hordeum vulgare HVSMEf0002H19r2_at HVSMEf0002H19r2 - - 1e+0 At2g43610 glycoside hydrolase family 19 protein C.G. S.X.
0.04 1e+0 36 Oryza sativa Os02g0185200 AK107034.1 - Cytochrome P450 family protein 9e-1 At3g26830 PAD3 (PHYTOALEXIN DEFICIENT 3) C.G. S.X.
0.03 1e+0 36 Populus trichocarpa Ptp.6116.1.S1_at BU811435 cytochrome P450 /// cytochrome P450 - 2e-3 At4g31500 CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1) C.G. S.X.
0.02 2e-1 38 Triticum aestivum Ta.12636.3.S1_at CA654694 - - 4e+0 At5g24155 squalene monooxygenase, putative / squalene epoxidase, putative C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1617684_at CB343033 - - 2e-2 At3g08610 unknown protein C.G. S.X.
0.02 5e+0 32 Zea mays Zm.6166.3.S1_at AI668497 Hypothetical protein LOC100193965 - 2e-6 At4g35000 APX3 (ASCORBATE PEROXIDASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009617 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
X GO:0010120 The chemical reactions and pathways resulting in the formation of camalexin, an indole phytoalexin.
X GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
X GO:0009700 The chemical reactions and pathways resulting in the formation of indole phytoalexins, any indole compound produced by plants as part of their defense response.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00903 Limonene and pinene degradation
00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
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