Gene omics information

Query gene ID At3g26790
Gene name FUS3 (FUSCA 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g26790822293FUS3 (FUSCA 3)Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin. FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed.S.X.H.G.
0.6882.2At1g09380837460integral membrane family protein / nodulin MtN21-relatedF:unknown;P:unknown;C:endomembrane system, membrane;BOPAMFS.X.H.G.
0.6882.2At5g50770835149AtHSD6 (hydroxysteroid dehydrogenase 6)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVS.X.H.G.
0.6579.6At1g11170837658unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.6176.7At3g44460823571DPBF2basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052. Located in the nucleus and expressed during seed maturation in the cotyledons.S.X.H.G.
0.5773.8At1g68380843167unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.5773.8At2g34700818035pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.5773.8At5g09640830823SCPL19encodes a serine carboxypeptidase-like (SCPL) protein. Mutants accumulate sinapoylglucose instead of sinapoylcholine, and have increased levels of choline and decreased activity of the enzyme sinapoylglucose:choline sinapoyltransferase.S.X.H.G.
0.5673.0At5g62800836401seven in absentia (SINA) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MPOFS.X.H.G.
0.5570.6At5g50260835091cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
471.7100.0E-MEXP-1443-raw-cel-1581869573
451.8100.0GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
287.9100.0GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
278.4100.0GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
228.0100.0GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
194.5100.0E-MEXP-1443-raw-cel-1581869515
184.8100.0GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
169.0100.0GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
160.799.9GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
157.699.9GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.033e-240At3g24650822061ABI3 (ABA INSENSITIVE 3)Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.C.G.S.X.
0.031e-138At4g09460826530ATMYB6Encodes myb6 DNA-binding protein.C.G.S.X.
0.011e-138At2g01950814726BRL2 (BRI1-LIKE 2)Encodes a leucine rich repeat receptor kinase and associated with provascular/procambial cells. Similar to BRI, brassinosteroid receptor protein.C.G.S.X.
0.041e-138At1g28300839724LEC2 (LEAFY COTYLEDON 2)Transcription factor that contains a B3 domain, a DNA-binding motif unique to plants and characteristic of several transcription factors. Plays critical roles both early and late during embryo development. LEC2 RNA accumulates primarily during seed development. LEC2 is required for the maintenance of suspensor morphology, specification of cotyledon identity, progression through the maturation phase, and suppression of premature germination. It establishes a cellular environment sufficient to initiate embryo development - ectopic, postembryonic expression of LEC2 in transgenic plants induces the formation of somatic embryos and other organ-like structures and often confers embryonic characteristics to seedlings and to reproductive and vegetative organs of mature plants.C.G.S.X.
0.025e-136At5g53920835475ribosomal protein L11 methyltransferase-relatedF:protein methyltransferase activity;P:protein amino acid methylation;C:cytoplasm;BOAFMPC.G.S.X.
0.015e-136At4g04970825838GSL1 (GLUCAN SYNTHASE-LIKE 1)encodes a gene similar to callose synthaseC.G.S.X.
0.035e-136At4g03580825658-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPC.G.S.X.
0.025e-136At3g49800824142BSD domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMVOFC.G.S.X.
0.025e-136At1g22230838828unknown proteinF:unknown;P:unknown;C:chloroplast;MOFPVBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.053e+034Glycine maxGmaAffx.86288.2.S1_atCA784397--6e-2At1g33055unknown proteinC.G.S.X.
0.031e-654Hordeum vulgareContig10926_atContig10926--3e-6At3g26790FUS3 (FUSCA 3)C.G.S.X.
0.044e-654Oryza sativaOs01g0713600AK109920.1-Transcriptional factor B3 family protein3e-6At3g26790FUS3 (FUSCA 3)C.G.S.X.
0.248e-1995Populus trichocarpaPtpAffx.223430.1.S1_atpmrna41435hypothetical protein-5e-19At3g26790FUS3 (FUSCA 3)C.G.S.X.
0.031e-138Triticum aestivumTaAffx.93296.1.S1_atBJ224490--6e-2At3g26790FUS3 (FUSCA 3)C.G.S.X.
0.035e-134Vitis vinifera1607903_atCF608166hypothetical protein LOC100267377-1e+0At1g67670unknown proteinC.G.S.X.
0.082e-756Zea maysZm.13587.1.S1_atAY107817.1--7e-7At3g26790FUS3 (FUSCA 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010373Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of gibberellins.
XGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
XGO:0010262Initiation of a somatic embryo-an embryo arising from previously differentiated somatic cells, rather than from fused haploid gametes.
XGO:0009733A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
XGO:0010116Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of abscisic acid.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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