Gene omics information

Query gene ID At3g26730
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6075.7At3g26730822285zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:chloroplast;OMFPBVAS.X.H.G.
0.5773.8At2g37570818333SLT1 (sodium- and lithium-tolerant 1)encodes a protein that can complement the salt-sensitive phenotype of a calcineurin (CaN)-deficient yeast mutant. This gene occurs in a single-copy and is 75% identical to tobacco SLT1 gene.S.X.H.G.
0.2217.5At5g18940832012Mo25 family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOS.X.H.G.
0.157.8At5g26240832693CLC-D (CHLORIDE CHANNEL D)member of Anion channel protein familyS.X.H.G.
0.103.4At1g72710843603CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
103.699.9GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
53.799.8GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
50.799.8GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
50.599.8GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
49.799.8GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
49.599.8GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
45.199.8GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
42.999.8GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
41.899.8GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
32.699.7GSM133958Fukuda_1-3_2A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.017e-240At1g21730838777kinesin-related protein (MKRP1)F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOFPBAVC.G.S.X.
0.013e-138At4g00360828019CYP86A2 (CYTOCHROME P450 86 A2)Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.C.G.S.X.
0.013e-138At1g69080843240universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:unknown;PMC.G.S.X.
0.011e+036At5g17030831566UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3)F:quercetin 3-O-glucosyltransferase activity, flavonol 3-O-arabinosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFC.G.S.X.
0.011e+036At5g62500836370ATEB1B (END BINDING PROTEIN 1B)encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.C.G.S.X.
0.011e+036At5g06560830544unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.111e-22109Glycine maxGma.10878.3.S1_atCA937700--3e-23At3g26730zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.026e-446Hordeum vulgareContig18223_atContig18223--1e+0At2g2771060S acidic ribosomal protein P2 (RPP2B)C.G.S.X.
0.029e-344Oryza sativaOs02g0516600AK068618.1-Zn-finger, RING domain containing protein5e-3At3g26730zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.041e-450Populus trichocarpaPtpAffx.45276.1.S1_atCK090427hypothetical protein-6e-5At3g26730zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.075e-1273Triticum aestivumTa.7054.2.S1_atBJ245931--2e-12At3g26730zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.021e+034Vitis vinifera1617171_s_atAF000371.1UDP glucose:flavonoid 3-o-glucosyltransferase-1e-2At5g17030UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3)C.G.S.X.
0.012e+034Zea maysZm.8561.2.A1_a_atBM332166hypothetical protein LOC100277438-4e+0At4g05070unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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