CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g26640

Gene name LWD2 (LIGHT-REGULATED WD 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At3g26640 822276 LWD2 (LIGHT-REGULATED WD 2) F:nucleotide binding;P:photoperiodism, flowering, entrainment of circadian clock by photoperiod;C:cellular_component unknown;MFPOBA S.X. H.G.
0.67 81.6 At1g55460 841993 Kin17 DNA-binding protein-related F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPBVA S.X. H.G.
0.60 75.7 At2g07696 815372 ribosomal protein S7 family protein F:structural constituent of ribosome;P:translation;C:ribosome, small ribosomal subunit, intracellular;BOPMAF S.X. H.G.
0.55 70.6 At3g49710 824133 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB S.X. H.G.
0.50 65.3 At3g21430 821697 - - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
680.8 100.0 GSM133775 Lindsey_1-27_torpedo-meristem_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
206.0 100.0 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
114.0 99.9 GSM133780 Lindsey_1-3_globular-apical_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
66.1 99.8 GSM133763 Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
53.7 99.8 GSM133778 Lindsey_1-2_globular-apical_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
51.3 99.8 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
39.1 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.4 99.7 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
36.6 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.4 99.7 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.82 0 906 At1g12910 837849 ATAN11 (ANTHOCYANIN11) Encodes a protein with similarity to the petunia WD repeat protein an11. C.G. S.X.
0.15 2e-16 87 At5g24520 832523 TTG1 (TRANSPARENT TESTA GLABRA 1) Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes. C.G. S.X.
0.02 3e-2 40 Atcg00480 - - chloroplast-encoded gene for beta subunit of ATP synthase C.G. S.X.
0.02 3e-2 40 At1g47128 841122 RD21 (responsive to dehydration 21) cysteine proteinase precursor-like protein/ dehydration stress-responsive gene (RD21) C.G. S.X.
0.02 1e-1 38 At2g36270 818199 ABI5 (ABA INSENSITIVE 5) Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages. C.G. S.X.
0.01 5e-1 36 At5g13800 831225 hydrolase, alpha/beta fold family protein F:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 6e-23 109 Glycine max Gma.5924.1.S1_at AW349257 - - 5e-33 At1g12910 ATAN11 (ANTHOCYANIN11) C.G. S.X.
0.16 5e-15 81 Hordeum vulgare Contig7533_at Contig7533 - - 2e-10 At1g12910 ATAN11 (ANTHOCYANIN11) C.G. S.X.
0.13 1e-9 65 Oryza sativa Os02g0524600 AU068637 - WD40 repeat protein 1e-10 At1g12910 ATAN11 (ANTHOCYANIN11) C.G. S.X.
0.49 1e-24 115 Populus trichocarpa Ptp.4607.1.S1_s_at BP932622 hypothetical protein - 2e-62 At1g12910 ATAN11 (ANTHOCYANIN11) C.G. S.X.
0.15 6e-13 75 Triticum aestivum TaAffx.84519.1.S1_at CA634935 - - 4e-8 At1g12910 ATAN11 (ANTHOCYANIN11) C.G. S.X.
0.19 5e-23 107 Vitis vinifera 1613680_a_at CB970387 WD repeat 2 - 4e-63 At1g12910 ATAN11 (ANTHOCYANIN11) C.G. S.X.
0.02 6e-2 38 Zea mays Zm.1330.1.S1_at AY104880.1 hypothetical protein LOC100272442 - 4e-2 At4g31580 SRZ-22 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0043153 The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night).
X GO:0048573 A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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