CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g26440

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At3g26440 822248 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO S.X. H.G.
0.62 77.3 At4g32650 829400 ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1) A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1. S.X. H.G.
0.52 67.4 At2g35000 818064 zinc finger (C3HC4-type RING finger) family protein E3 ligase-like protein induced by chitin oligomers. S.X. H.G.
0.51 66.3 At5g06300 830518 carboxy-lyase F:carboxy-lyase activity;P:metabolic process;C:unknown;BOPFMA S.X. H.G.
0.49 63.5 At4g05200 825868 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.44 57.2 At1g50560 841477 CYP705A25 member of CYP705A S.X. H.G.
0.39 48.4 At1g18910 838472 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBV S.X. H.G.
0.39 48.4 At5g51160 835190 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA S.X. H.G.
0.38 46.7 At3g26470 822252 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.38 46.7 At1g69810 843317 WRKY36 member of WRKY Transcription Factor; Group II-b S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.0 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
36.3 99.7 GSM75513 Col-0 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
34.8 99.7 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
33.4 99.7 GSM265424 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
30.5 99.7 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
30.1 99.7 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
29.1 99.7 GSM75512 Col-0 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
28.9 99.7 GSM75509 Col-0 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
27.7 99.7 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
26.2 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.52 4e-125 448 At1g13000 837858 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB C.G. S.X.
0.28 2e-37 157 At2g28310 817377 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO C.G. S.X.
0.28 3e-30 133 At1g67850 843111 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 4e-46 186 Glycine max Gma.16609.2.S1_at BM085783 - - 9e-63 At1g67850 unknown protein C.G. S.X.
0.21 4e-34 145 Hordeum vulgare Contig10608_at Contig10608 - - 6e-32 At1g08040 unknown protein C.G. S.X.
0.21 2e-26 121 Oryza sativa Os01g0971200 AK064075.1 - Conserved hypothetical protein 4e-12 At2g28310 unknown protein C.G. S.X.
0.26 1e-33 145 Populus trichocarpa PtpAffx.71189.1.A1_a_at CV277875 hypothetical protein - 1e-32 At1g08040 unknown protein C.G. S.X.
0.18 1e-23 111 Triticum aestivum Ta.6006.1.S1_at CK216649 - - 9e-34 At1g08040 unknown protein C.G. S.X.
0.16 1e-20 99 Vitis vinifera 1618128_at CB009517 hypothetical protein LOC100267242 - 2e-112 At2g28310 unknown protein C.G. S.X.
0.20 4e-34 145 Zea mays Zm.6729.1.S1_at BM080531 hypothetical protein LOC100273464 /// lysine ketoglutarate reductase trans-splicing related 1 - 6e-34 At1g67850 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage