CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g26350

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g26350 822239 - F:unknown;P:unknown;C:chloroplast;MPFOVBA S.X. H.G.
0.83 91.4 At2g34540 818017 unknown protein F:unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.80 89.8 At2g15680 816061 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB S.X. H.G.
0.80 89.8 At5g26190 832688 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;POM S.X. H.G.
0.80 89.8 At5g07710 830664 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOP S.X. H.G.
0.79 89.1 At5g22870 832350 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.76 87.4 At4g33490 829486 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;POMF S.X. H.G.
0.75 86.9 At5g03530 831810 RABC2A (RAB GTPASE HOMOLOG C2A) Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes. S.X. H.G.
0.74 86.1 At1g75720 843906 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.73 85.5 At3g05620 819728 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1050.9 100.0 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
446.6 100.0 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
260.9 100.0 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
216.8 100.0 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
189.1 100.0 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
123.2 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
114.5 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
94.9 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
88.9 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
85.8 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 4e-20 99 At1g13050 837862 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PMFOBV C.G. S.X.
0.01 5e-1 36 At5g28300 832914 trihelix DNA-binding protein, putative F:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFBVA C.G. S.X.
0.01 5e-1 36 At5g58160 835928 actin binding F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MBFOPVA C.G. S.X.
0.01 5e-1 36 At4g30150 829138 - F:unknown;P:unknown;C:unknown;POMVB C.G. S.X.
0.02 5e-1 36 At4g27390 828847 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;BP C.G. S.X.
0.01 5e-1 36 At3g58050 824974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 5e-1 36 At3g12380 820416 ATARP5 (ACTIN-RELATED PROTEIN 5) Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family. C.G. S.X.
0.01 5e-1 36 At3g17630 821030 ATCHX19 (CATION/H+ EXCHANGER 19) member of Putative Na+/H+ antiporter family C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Glycine max GmaAffx.30771.1.S1_at BG045701 - - 5e-2 At2g40020 - C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HM02P21u_s_at HM02P21u - - 2e-2 At4g37608 unknown protein C.G. S.X.
0.03 3e-1 38 Oryza sativa Os02g0239700 9630.m01340 - - 2e-2 At3g26350 - C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.94831.1.A1_at CV269630 SET domain protein - 3e+0 At4g16140 proline-rich family protein C.G. S.X.
0.03 6e-1 36 Triticum aestivum Ta.18875.1.S1_at CA643370 - - 1e-2 At5g03545 unknown protein C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1610733_at CD801148 hypothetical protein LOC100258617 - 2e-1 At5g09380 DNA-directed RNA polymerase III RPC4 family protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.4202.1.A1_at CB350777 - - 6e-3 At3g25577 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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