CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g26280

Gene name CYP71B4

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At3g26280 822231 CYP71B4 cytochrome P450 monooxygenase S.X. H.G.
0.33 38.1 At4g19170 827655 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase S.X. H.G.
0.24 20.7 At5g63800 836500 MUM2 (MUCILAGE-MODIFIED 2) Involved in mucilage formation. Mutants form columella and outer cell wall architecture of the mucilage cells resembles wild-type. However, mum2 seeds completely lack seed coat mucilage. This mutation appears to represent a later step in the development of this cell-type. Encodes a beta-galactosidase involved in seed coat mucilage biosynthesis. Member of Glycoside Hydrolase Family 35 S.X. H.G.
0.19 12.7 At3g62550 825429 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:vacuole;BPAOMF S.X. H.G.
0.10 3.4 At2g03310 814860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
41.9 99.8 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
39.6 99.8 GSM269829 WT leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
38.6 99.8 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
33.4 99.7 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
33.1 99.7 GSM269825 T8 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
32.0 99.7 GSM268249 dor-drought-2, biological rep 2 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
28.5 99.7 E-ATMX-32-raw-cel-1562974681
28.3 99.7 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
27.9 99.7 GSM269819 C2 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
25.2 99.6 GSM131539 ATGE_25_C GSE5630 AtGenExpress: Developmental series (leaves)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.81 0 1047 At3g26270 822230 CYP71B25 putative cytochrome P450 C.G. S.X.
0.59 1e-147 523 At3g26220 822223 CYP71B3 cytochrome P450 monooxygenase C.G. S.X.
0.55 3e-136 486 At3g26230 822224 CYP71B24 putative cytochrome P450 C.G. S.X.
0.08 5e-11 69 At3g44250 823550 CYP71B38 putative cytochrome P450 C.G. S.X.
0.21 5e-11 69 At1g13110 837868 CYP71B7 member of CYP71B C.G. S.X.
0.16 2e-10 67 At1g13080 837865 CYP71B2 (CYTOCHROME P450 71B2) cytochrome P450 monooxygenase C.G. S.X.
0.11 3e-9 63 At3g26190 822220 CYP71B21 putative cytochrome P450 C.G. S.X.
0.10 3e-9 63 At3g53300 824497 CYP71B31 putative cytochrome P450 C.G. S.X.
0.17 3e-9 63 At3g26160 822216 CYP71B17 putative cytochrome P450 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max Gma.154.1.S1_at Y10490.1 - - 1e-2 At3g26180 CYP71B20 C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HVSMEn0016H11r2_s_at HVSMEn0016H11r2 - - 3e+0 At5g23540 26S proteasome regulatory subunit, putative C.G. S.X.
0.02 4e-4 48 Oryza sativa Os02g0529800 9630.m03109 - Cytochrome P450 family protein 3e-3 At2g24180 CYP71B6 (CYTOCHROME P450 71B6) C.G. S.X.
0.04 3e-4 48 Populus trichocarpa PtpAffx.100112.1.A1_at BP931069 cytochrome P450 - 8e-2 At4g11393 - C.G. S.X.
0.04 3e-6 54 Triticum aestivum TaAffx.54157.2.S1_at CA663807 - - 6e-3 At1g74550 CYP98A9 C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1612259_at CF206456.1 - - 6e-3 At2g45580 CYP76C3 C.G. S.X.
0.02 3e-4 46 Zea mays ZmAffx.537.1.A1_at AI711809 - - 3e+0 At5g47610 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00903 Limonene and pinene degradation
00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
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