CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g26210

Gene name CYP71B23

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.15 7.8 At3g26210 822222 CYP71B23 putative cytochrome P450 S.X. H.G.
0.40 50.8 At5g46050 834646 PTR3 (PEPTIDE TRANSPORTER 3) Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies. S.X. H.G.
0.33 38.1 At5g38900 833882 DSBA oxidoreductase family protein F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA S.X. H.G.
0.27 26.2 At1g14870 838052 - F:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PMFO S.X. H.G.
0.17 10.2 At5g24210 832488 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.9 99.7 GSM134457 St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
31.4 99.7 GSM128683 Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
30.5 99.7 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
30.0 99.7 GSM128664 Underwood_1-18_Cor-hrpS-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
29.5 99.7 GSM128685 Underwood_1-38_E.coli-TUV86-2-fliC-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
29.3 99.7 GSM128673 Underwood_1-25_hrpA-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
28.9 99.7 E-MEXP-1094-raw-cel-1379507313
26.1 99.7 GSM128672 Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
24.2 99.6 GSM128682 Underwood_1-35_E.coli-0157-H7-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
23.7 99.6 GSM142847 MG001_ATH1_A28-Torres-9N1 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.52 6e-51 202 At1g13110 837868 CYP71B7 member of CYP71B C.G. S.X.
0.46 5e-48 192 At1g13090 837866 CYP71B28 putative cytochrome P450 C.G. S.X.
0.34 3e-37 157 At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. C.G. S.X.
0.39 4e-27 123 At1g13100 837867 CYP71B29 putative cytochrome P450 C.G. S.X.
0.17 9e-16 85 At3g26270 822230 CYP71B25 putative cytochrome P450 C.G. S.X.
0.21 9e-16 85 At3g26220 822223 CYP71B3 cytochrome P450 monooxygenase C.G. S.X.
0.17 9e-13 75 At3g26200 822221 CYP71B22 putative cytochrome P450 C.G. S.X.
0.10 2e-10 67 At3g26180 822219 CYP71B20 putative cytochrome P450 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 7e-2 40 Glycine max GmaAffx.83206.1.S1_at BE610184 - - 2e-2 At3g26210 CYP71B23 C.G. S.X.
0.02 6e+0 32 Hordeum vulgare Contig4721_s_at Contig4721 - - 1e-3 At5g41010 NRPB12 C.G. S.X.
0.03 1e-4 50 Oryza sativa Os06g0641800 BQ906171 - Cytochrome P450 family protein 3e+0 At5g04250 OTU-like cysteine protease family protein C.G. S.X.
0.03 4e-3 44 Populus trichocarpa Ptp.2209.1.S1_at BU893674 cytochrome P450 /// cytochrome P450 - 2e-1 At5g66815 unknown protein C.G. S.X.
0.03 8e-1 36 Triticum aestivum TaAffx.37245.2.A1_at BJ307589 - - 3e-1 At3g12820 AtMYB10 (myb domain protein 10) C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1621363_at CA809467 hypothetical protein LOC100250687 - 5e-4 At1g13080 CYP71B2 (CYTOCHROME P450 71B2) C.G. S.X.
0.02 5e+0 32 Zea mays Zm.16998.1.A1_at CK347869 hypothetical protein LOC100193690 - 4e-1 At4g00840 zinc ion binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00903 Limonene and pinene degradation
00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
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