CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g26120

Gene name TEL1 (TERMINAL EAR1-LIKE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.76 87.4 At3g26120 822211 TEL1 (TERMINAL EAR1-LIKE 1) Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL1 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins. S.X. H.G.
0.74 86.1 At5g52000 835275 IMPA-8 (IMPORTIN ALPHA ISOFORM 8) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. S.X. H.G.
0.73 85.5 At2g01800 814711 COP1-interacting protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVA S.X. H.G.
0.69 82.9 At1g50190 3767425 - F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown S.X. H.G.
0.68 82.2 At4g30540 829177 glutamine amidotransferase class-I domain-containing protein F:catalytic activity;P:unknown;C:cellular_component unknown;OBAFPVM S.X. H.G.
0.65 79.6 At4g20290 827776 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM S.X. H.G.
0.65 79.6 At3g16930 820948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.64 78.9 At2g14810 815969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.63 78.1 At1g18220 838402 ATPUP9 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. S.X. H.G.
0.62 77.3 At5g17720 831639 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
254.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
250.8 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
226.7 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
222.6 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
221.4 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
212.0 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
210.2 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
208.4 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
204.8 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
198.0 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.11 3e-16 87 At1g67770 843102 TEL2 (TERMINAL EAR1-LIKE 2) Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL2 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins. Expression patterns were similar to TEL1, with lower expression levels in most tissues examined. C.G. S.X.
0.01 4e-3 44 At1g49750 841398 leucine-rich repeat family protein F:protein binding;P:unknown;C:chloroplast;MPBOFVA C.G. S.X.
0.02 6e-2 40 At4g18920 827627 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF C.G. S.X.
0.01 2e-1 38 At5g36110 833607 CYP716A1 member of CYP716A C.G. S.X.
0.02 2e-1 38 At4g17800 827502 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF C.G. S.X.
0.01 2e-1 38 At3g45810 823724 ferric reductase-like transmembrane component family protein F:in 8 functions;P:oxidation reduction;C:membrane;MPFOBA C.G. S.X.
0.01 2e-1 38 At2g20110 816530 tesmin/TSO1-like CXC domain-containing protein F:transcription factor activity;P:unknown;C:cellular_component unknown;OMPFBV C.G. S.X.
0.01 2e-1 38 At1g25540 839141 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-19 99 Glycine max GmaAffx.70109.1.S1_at BG551557 - - 3e-20 At3g26120 TEL1 (TERMINAL EAR1-LIKE 1) C.G. S.X.
0.02 3e-2 40 Hordeum vulgare HVSMEl0013N20r2_at HVSMEl0013N20r2 - - 7e-2 At3g44140 unknown protein C.G. S.X.
0.03 1e-4 50 Oryza sativa Os01g0907900 9629.m06750 - Terminal ear1 5e-12 At1g67770 TEL2 (TERMINAL EAR1-LIKE 2) C.G. S.X.
0.13 2e-14 81 Populus trichocarpa PtpAffx.208649.1.S1_at pmrna17168 hypothetical protein - 1e-14 At3g26120 TEL1 (TERMINAL EAR1-LIKE 1) C.G. S.X.
0.01 2e-1 38 Triticum aestivum Ta.622.1.S1_at BQ160760 AML15 - 2e-26 At1g29400 AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5) C.G. S.X.
0.02 7e-2 38 Vitis vinifera 1607473_at CF214064 hypothetical protein LOC100259312 - 2e-9 At3g25130 unknown protein C.G. S.X.
0.05 1e-7 57 Zea mays Zm.388.1.A1_at AF047852.1 terminal ear1 - 3e-7 At3g26120 TEL1 (TERMINAL EAR1-LIKE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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