Gene omics information

Query gene ID At3g25950
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5974.7At3g25950822192-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PMS.X.H.G.
0.5065.3At3g45130823649LAS1F:lanosterol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFMAS.X.H.G.
0.3541.6At1g34490840351membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-relatedF:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOFS.X.H.G.
0.3439.8At1g16160838185WAKL5 (wall associated kinase-like 5)WAK-like kinaseS.X.H.G.
0.3235.7At3g496308241252-oxoacid-dependent oxidase, putativeF:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFMS.X.H.G.
0.2930.3At5g51310835205gibberellin 20-oxidase-relatedF:oxidoreductase activity, iron ion binding;P:gibberellin biosynthetic process;C:unknown;POBFMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
265.5100.0GSM184478Lateral Root Cap root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
211.3100.0GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
190.8100.0GSM184484Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
124.399.9GSM184483Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
102.999.9GSM184480Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
93.799.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
91.999.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
88.999.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
86.999.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
84.499.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.043e-550At3g27270822346-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;POC.G.S.X.
0.042e-240At4g13195826934CLE44 (CLAVATA3/ESR-RELATED 44)Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE44 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE41 (At3g24770).C.G.S.X.
0.032e-240At4g01575828124serine protease inhibitor, Kazal-type family proteinF:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.029e-238At5g36110833607CYP716A1member of CYP716AC.G.S.X.
0.029e-238At3g27710822393zinc finger protein-relatedF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVBC.G.S.X.
0.014e-136At3g55660824732ROPGEF6Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.C.G.S.X.
0.024e-136At2g20720816600pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.014e-136At1g30690839949SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinF:transporter activity;P:transport;C:cytosol, nucleus, plasma membrane;OMBFPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.068e-342Glycine maxGmaAffx.19383.1.S1_atBI497920--4e-3At3g25950-C.G.S.X.
0.033e+032Hordeum vulgareContig14956_s_atContig14956--6e-2At4g33870peroxidase, putativeC.G.S.X.
0.037e-136Oryza sativaOs11g02632009639.m01460--4e-2At4g13195CLE44 (CLAVATA3/ESR-RELATED 44)C.G.S.X.
0.065e-136Populus trichocarpaPtpAffx.201015.1.S1_atpmrna1992hypothetical protein-4e-1At3g25950-C.G.S.X.
0.043e-240Triticum aestivumTaAffx.114385.1.S1_atCA594001--4e-2At1g27730STZ (salt tolerance zinc finger)C.G.S.X.
0.042e+032Vitis vinifera1611048_atCB970151hypothetical protein LOC100255990-2e-21At4g32390phosphate translocator-relatedC.G.S.X.
0.026e-134Zea maysZm.3153.3.S1_a_atCF624577B12D protein-1e-3At1g20440COR47 (COLD-REGULATED 47)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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