CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g25930

Gene name universal stress protein (USP) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P S.X. H.G.
0.61 76.7 At4g37060 829860 PLP5 (PATATIN-LIKE PROTEIN 5) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF S.X. H.G.
0.55 70.6 At3g01420 821135 DOX1 Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. S.X. H.G.
0.55 70.6 At4g37010 829855 caltractin, putative / centrin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB S.X. H.G.
0.40 50.8 At3g09220 820078 LAC7 (laccase 7) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
72.7 99.9 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
70.1 99.9 GSM184533 Protoplasted root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
62.3 99.8 GSM142755 MJ001_ATH1_A6-jones-RH-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
56.6 99.8 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
49.9 99.8 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
47.0 99.8 GSM142752 MJ001_ATH1_A3-jones-rh1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
44.8 99.8 GSM142753 MJ001_ATH1_A4-jones-rh2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
44.1 99.8 GSM260881 Yap_A2-AMF GSE10323 Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
44.0 99.8 GSM184539 Whole roots 2hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
40.8 99.8 GSM179961 Arabidopsis roots, ethylene treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 6e-2 38 At1g72200 843552 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB C.G. S.X.
0.04 2e-1 36 At2g41200 818719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 9e-1 34 At5g38780 833869 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF C.G. S.X.
0.03 9e-1 34 At3g02980 821166 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MOPFAB C.G. S.X.
0.03 9e-1 34 At2g37940 818371 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOP C.G. S.X.
0.01 9e-1 34 At1g74260 843766 PUR4 (purine biosynthesis 4) Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development. C.G. S.X.
0.01 9e-1 34 At1g45180 841086 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB C.G. S.X.
0.01 4e+0 32 At5g38210 833803 serine/threonine protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 4e+0 32 At4g15500 827222 UGT84A4 Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max HgAffx.21904.1.S1_at BI749512 - - 8e-1 At2g02026 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig10189_at Contig10189 - - 4e+0 At3g25930 universal stress protein (USP) family protein C.G. S.X.
0.05 2e+0 34 Oryza sativa Os.6653.1.S1_at - - - 0 C.G. S.X.
0.04 5e+0 32 Populus trichocarpa PtpAffx.95151.1.A1_at CV257952 - - 9e-1 At2g15360 galactoside 2-alpha-L-fucosyltransferase C.G. S.X.
0.04 9e-1 34 Triticum aestivum TaAffx.78994.1.S1_at CA723915 - - 8e-1 At3g25930 universal stress protein (USP) family protein C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1616632_at CF517520 - - 4e+0 At3g51470 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.04 6e+0 30 Zea mays ZmAffx.149.1.A1_at AI667835 - - 3e+0 At3g10140 RECA3 (recA homolog 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006950 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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