Gene omics information

Query gene ID At3g25910
Gene name zinc ion binding
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9597.0At3g25910822188zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:intracellular;MPOFBVS.X.H.G.
0.4355.3At5g04910830373unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.3846.7At2g45620819170nucleotidyltransferase family proteinF:nucleotidyltransferase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBS.X.H.G.
0.3846.7At4g21450826300vesicle-associated membrane family protein / VAMP family proteinF:structural molecule activity;P:biological_process unknown;C:plasma membrane;MOFPBVS.X.H.G.
0.3235.7At2g29400817489TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)Type 1 protein phosphatase, expressed in roots, rosettes and flowersS.X.H.G.
0.3133.8At5g18110831929NCBP (NOVEL CAP-BINDING PROTEIN)F:RNA binding, translation initiation factor activity;P:translational initiation;C:cytoplasm;MOFPS.X.H.G.
0.2930.3At3g13200820510EMB2769 (EMBRYO DEFECTIVE 2769)F:molecular_function unknown;P:nuclear mRNA splicing, via spliceosome;C:spliceosome;MOFPBVAS.X.H.G.
0.2319.3At5g06140830501SNX1 (SORTING NEXIN 1)Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1.S.X.H.G.
0.168.8At2g21240816663BPC4 (BASIC PENTACYSTEINE 4)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMBS.X.H.G.
0.114.1At5g12120831085ubiquitin-associated (UBA)/TS-N domain-containing proteinF:unknown;P:biological_process unknown;C:plasma membrane;OMFPBS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
32.799.7GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
21.499.6GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
20.899.6GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
20.199.6GSM290758root - 01% oxygen - 48h - AGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
19.699.6GSM25316548h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
15.499.5GSM133118RIKEN-YAMAUCHI1BGSE5687AtGenExpress: Different temperature treatment of seeds
14.899.4GSM128676Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
14.299.4GSM142596DB001_ATH1_A6-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
13.999.4GSM142592DB001_ATH1_A2-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
13.599.4GSM10484lec1-1 Post-Mature Green Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.034e-550At4g17940827519bindingF:binding;P:biological_process unknown;C:unknown;PBOMAC.G.S.X.
0.024e-550At1g11440837686-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAC.G.S.X.
0.012e-448At3g42670823287CHR38 (CHROMATIN REMODELING 38)Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced.C.G.S.X.
0.012e-448At3g18390821368EMB1865 (embryo defective 1865)F:RNA binding;P:embryonic development ending in seed dormancy;C:chloroplast;OPMFVBAC.G.S.X.
0.022e-448At1g66620842980seven in absentia (SINA) protein, putativeF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MOFPBVAC.G.S.X.
0.026e-446At5g28080832881WNK9Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.C.G.S.X.
0.026e-446At5g66540836786-F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVAC.G.S.X.
0.026e-446At4g18770827611MYB98 (myb domain protein 98)MYB98 is a member of the R2R3-MYB gene family, the members of which likely encode transcription factors. Within an ovule, MYB98 is expressed exclusively in the synergid cells, and mutations in this gene affect the female gametophyte specifically. myb98 female gametophytes are affected in two unique features of the synergid cell, pollen tube guidance and the filiform apparatus, but are otherwise normal. This suggests that MYB98 controls the development of specific features within the synergid cell during female gametophyte development. MYB98 also is expressed in trichomes and endosperm. Homozygous myb98 mutants exhibit no sporophytic defects, including trichome and endosperm defects.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.101e-242Glycine maxGmaAffx.87621.1.S1_atBQ612855--3e-16At1g68140-C.G.S.X.
0.037e-548Hordeum vulgareContig12125_atContig12125--6e+0At3g07522unknown proteinC.G.S.X.
0.037e-240Oryza sativaOsAffx.26373.1.S1_at---0C.G.S.X.
0.098e-756Populus trichocarpaPtpAffx.202908.1.S1_atpmrna5759hypothetical protein-3e-7At3g25910zinc ion bindingC.G.S.X.
0.039e-342Triticum aestivumTa.20706.1.S1_s_atBQ838776--1e-11At3g24740-C.G.S.X.
0.195e-1477Vitis vinifera1612667_a_atCB349231hypothetical protein LOC100247481-2e-13At3g25910zinc ion bindingC.G.S.X.
0.026e-238Zea maysZm.9441.1.A1_atAY105453.1hypothetical protein LOC100278105-1e+0At2g33790AGP30 (ARABINOGALACTAN PROTEIN30)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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