CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g25780

Gene name AOC3 (ALLENE OXIDE CYCLASE 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At3g25780 822169 AOC3 (ALLENE OXIDE CYCLASE 3) Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884. S.X. H.G.
0.61 76.7 At1g17420 838314 LOX3 Lipoxygenase S.X. H.G.
0.46 59.8 At2g06050 815160 OPR3 (OPDA-REDUCTASE 3) Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. S.X. H.G.
0.44 57.2 At5g49520 835012 WRKY48 member of WRKY Transcription Factor; Group II-c S.X. H.G.
0.44 57.2 At5g65300 836655 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.40 50.8 At1g17380 838310 JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5) F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P S.X. H.G.
0.35 41.6 At3g51450 824308 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
90.0 99.9 E-MEXP-546-raw-cel-863289424
86.6 99.9 E-MEXP-546-raw-cel-863289476
74.8 99.9 E-MEXP-1443-raw-cel-1581869863
74.4 99.9 E-MEXP-546-raw-cel-863289532
58.6 99.8 E-MEXP-807-raw-cel-1173273196
53.7 99.8 E-MEXP-807-raw-cel-1173273170
53.2 99.8 GSM131146 AtGen_B-32_3-4-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
50.0 99.8 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
49.9 99.8 E-MEXP-98-raw-cel-320188859
49.1 99.8 E-MEXP-807-raw-cel-1173273252
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.64 3e-131 468 At3g25760 822167 AOC1 (ALLENE OXIDE CYCLASE 1) encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway. C.G. S.X.
0.64 2e-120 432 At3g25770 822168 AOC2 (ALLENE OXIDE CYCLASE 2) Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway. Note: Nomenclature for Arabidopsis allene oxide cyclase 2 (AOC2, AT3G25770) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC2 (AT3G25770) is also referred to as AOC3 in He et al. 2002 Plant Physiology, 128:876-884. C.G. S.X.
0.71 1e-71 270 At1g13280 837888 AOC4 (ALLENE OXIDE CYCLASE 4) Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is reduced during senescence, a process that involves jasmonic acid signalling pathway. C.G. S.X.
0.02 2e-2 40 At2g30590 817609 WRKY21 Encodes WRKY DNA-binding protein 21 (WRKY21). C.G. S.X.
0.01 1e-1 38 At5g59660 836087 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA C.G. S.X.
0.02 1e-1 38 At4g17890 827512 AGD8 (ARF-GAP DOMAIN 8) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. C.G. S.X.
0.01 4e-1 36 At5g45800 834620 MEE62 (maternal effect embryo arrest 62) F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:embryonic development ending in seed dormancy, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;PMOBFVA C.G. S.X.
0.02 4e-1 36 At5g40540 834052 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 6e-7 56 Glycine max Gma.8020.3.S1_at BI943104 - - 9e-7 At3g25780 AOC3 (ALLENE OXIDE CYCLASE 3) C.G. S.X.
0.03 7e-1 34 Hordeum vulgare Contig15528_at Contig15528 - - 1e+0 At3g46030 HTB11 C.G. S.X.
0.02 8e-1 36 Oryza sativa OsAffx.18638.1.S1_at - - - 0 C.G. S.X.
0.12 2e-3 44 Populus trichocarpa Ptp.4218.1.S1_s_at CN520793 hypothetical protein - 2e-3 At3g25780 AOC3 (ALLENE OXIDE CYCLASE 3) C.G. S.X.
0.04 6e+0 32 Triticum aestivum TaAffx.81979.1.S1_at CA679488 - - 6e-1 At4g37810 unknown protein C.G. S.X.
0.07 1e-4 46 Vitis vinifera 1616003_at CF372113 - - 1e-15 At3g25770 AOC2 (ALLENE OXIDE CYCLASE 2) C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.1147.1.A1_at AW400224 - - 6e-1 At5g64667 IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009620 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus.
X GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
S GO:0009695 The chemical reactions and pathways resulting in the formation of jasmonic acid, a fatty acid derivative.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00056 Jasmonic acid biosynthesis
00433 Linolenic acid metabolism (cytosolic pathway)

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00592 alpha-Linolenic acid metabolism
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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