Gene omics information

Query gene ID At3g25620
Gene name ABC transporter family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2522.6At3g25620822149ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:chloroplast;BOMFAPVS.X.H.G.
0.5065.3At3g53720824539ATCHX20 (CATION/H+ EXCHANGER 20)member of Putative Na+/H+ antiporter family. Involved in the osmoregulation through K(+) fluxes and possibly pH modulation of an active endomembrane system in guard cells.S.X.H.G.
0.2726.2At4g18290827555KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)One of the four members of the Shaker family encoding guard cell potassium inward channels. Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type.S.X.H.G.
0.168.8At4g17970827522unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPOFS.X.H.G.
0.146.8At1g10060837542branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
389.6100.0E-MEXP-1443-raw-cel-1581869803
341.1100.0E-MEXP-1443-raw-cel-1581869515
212.8100.0E-MEXP-1443-raw-cel-1581869745
154.299.9E-MEXP-1443-raw-cel-1581869573
90.999.9GSM242960Steroid day 3 (day3D2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
90.099.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
73.699.9GSM242958Mock day 3 (day3E2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
55.399.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.499.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
54.199.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.025e-550At4g27420828850ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMFAPVC.G.S.X.
0.105e-550At1g71960843527ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVC.G.S.X.
0.071e-242At1g31770840064ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVC.G.S.X.
0.024e-240At5g06530830541ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPVC.G.S.X.
0.024e-240At1g75430843879BLH11 (BEL1-LIKE HOMEODOMAIN 11)F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFOC.G.S.X.
0.012e-138At3g55130824679ATWBC19 (White-Brown Complex homolog 19)Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.C.G.S.X.
0.017e-136At1g67070843027DIN9 (DARK INDUCIBLE 9)Encodes a protein with phosphomannose isomerase activity that is involved in synthesis of ascorbic acid. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGmaAffx.24334.1.S1_atBU090953--8e-4At2g48080oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.011e+034Hordeum vulgareContig3881_atContig3881--2e-21At3g16100ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)C.G.S.X.
0.025e+034Oryza sativaOsAffx.21853.1.S1_x_at---0C.G.S.X.
0.173e-1997Populus trichocarpaPtpAffx.208987.1.S1_atpmrna17808white-brown-complex ABC transporter family-3e-19At3g25620ABC transporter family proteinC.G.S.X.
0.023e+034Triticum aestivumTa.8089.1.A1_atBQ161258--6e-1At4g39260GR-RBP8C.G.S.X.
0.023e+032Vitis vinifera1618771_s_atCD715283hypothetical protein LOC100262843-3e-4At1g25560TEM1 (TEMPRANILLO 1)C.G.S.X.
0.022e+130Zea maysZmAffx.70.1.A1_atAI665164--8e-1At2g37780DC1 domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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