CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g25610

Gene name haloacid dehalogenase-like hydrolase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At3g25610 822148 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:plasma membrane;MBOFPAV S.X. H.G.
0.50 65.3 At1g62300 842527 WRKY6 transcription factor WRKY6 (WRKY6) S.X. H.G.
0.50 65.3 At5g25930 832662 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA S.X. H.G.
0.40 50.8 At1g74360 843777 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;MPOBFVA S.X. H.G.
0.33 38.1 At1g28190 839713 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
94.6 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
62.5 99.8 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
53.4 99.8 GSM133029 BC482-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
47.5 99.8 E-MEXP-1443-raw-cel-1581869745
45.5 99.8 E-MEXP-807-raw-cel-1173272948
41.9 99.8 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
41.0 99.8 E-MEXP-1443-raw-cel-1581869803
39.5 99.8 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
38.5 99.8 GSM133030 BC482-2 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
38.0 99.8 GSM272992 flu over-tAPX 14-2, biological rep2 GSE10812 Expression data from thylakoidal ascorbate peroxidase overexpressor Arabidopsis thaliana (Col) rosette leaves
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.82 0 1574 At1g13210 837881 ACA.l (autoinhibited Ca2+/ATPase II) F:calmodulin binding, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:plasma membrane;MBOFPA C.G. S.X.
0.17 6e-56 220 At3g27870 822407 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, ATP biosynthetic process, phospholipid transport;C:integral to membrane, membrane;MBOFPAV C.G. S.X.
0.31 2e-40 169 At1g68710 843201 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:mitochondrion, integral to membrane, membrane;MBOFPAV C.G. S.X.
0.26 3e-33 145 At1g26130 839154 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, ATP biosynthetic process, phospholipid transport;C:plasma membrane, chloroplast envelope;MBOFPAV C.G. S.X.
0.08 4e-23 111 At1g72700 843602 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:ATP biosynthetic process, phospholipid transport;C:integral to membrane, membrane;MBOFPAV C.G. S.X.
0.09 9e-15 83 At1g54280 841869 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:phospholipid transport, ATP biosynthetic process;C:integral to membrane, membrane;MBOFPAV C.G. S.X.
0.08 1e-10 69 At1g17500 838324 ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, ATP biosynthetic process, phospholipid transport;C:integral to membrane, membrane;MBOFPAV C.G. S.X.
0.05 2e-9 65 At3g13900 820603 ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:ATP biosynthetic process, phospholipid transport;C:integral to membrane, membrane;MBOFPAV C.G. S.X.
0.04 2e-6 56 At1g59820 842275 ALA3 (Aminophospholipid ATPase3) Encodes a phospholipid translocase. Involved in secretory vesicle formation from trans-Golgi in peripheral columella cells at the root tip. Mutants have short primary roots and grow slower. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-14 83 Glycine max GmaAffx.64805.1.S1_at BM890890 - - 2e-13 At1g54280 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.03 6e-2 40 Hordeum vulgare Contig15864_at Contig15864 - - 5e-11 At1g68710 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.09 3e-13 79 Oryza sativa OsAffx.26674.1.S1_at - - - 0 C.G. S.X.
0.21 2e-44 182 Populus trichocarpa PtpAffx.210439.1.S1_at pmrna20500 aminophospholipid ATPase - 6e-65 At1g68710 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.11 6e-22 107 Triticum aestivum Ta.19983.1.S1_at CA663916 - - 2e-23 At1g68710 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.01 5e-1 36 Vitis vinifera 1611985_at CF404643 hypothetical protein LOC100267021 - 2e-26 At5g15880 unknown protein C.G. S.X.
0.01 3e+0 34 Zea mays Zm.4038.1.A1_at AI737071 hypothetical protein LOC100274123 - 9e-5 At1g75230 HhH-GPD base excision DNA repair family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006754 The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0015914 The directed movement of phospholipids into, out of, within or between cells. Phospholipids are any lipids containing phosphoric acid as a mono- or diester.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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