CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g25540

Gene name LAG1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.47 61.2 At3g25540 822140 LAG1 LAG1 homolog 1 S.X. H.G.
0.86 93.1 At4g12650 826878 - F:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plasma membrane, vacuole;MPOF S.X. H.G.
0.80 89.8 At4g32390 829374 phosphate translocator-related F:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOB S.X. H.G.
0.67 81.6 At1g64650 842773 - F:unknown;P:unknown;C:plasma membrane;BPMOFA S.X. H.G.
0.57 73.8 At1g14670 838029 endomembrane protein 70, putative F:unknown;P:transport;C:integral to membrane, Golgi apparatus, membrane;MPOF S.X. H.G.
0.55 70.6 At5g35160 833470 - F:unknown;P:unknown;C:integral to membrane, Golgi apparatus;MPOF S.X. H.G.
0.47 61.2 At5g18520 831970 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB S.X. H.G.
0.40 50.8 At1g61790 842476 OST3/OST6 family protein F:oligosaccharide transmembrane transporter activity;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane, chloroplast;MFPO S.X. H.G.
0.40 50.8 At3g56110 824777 PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.6 99.4 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
13.2 99.4 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
11.3 99.3 GSM265421 Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
10.9 99.2 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
10.0 99.2 GSM265429 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.9 99.1 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
9.1 99.1 GSM184895 Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
8.9 99.0 GSM299331 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 5 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
8.8 99.0 GSM265412 Arabidopsis, whole roots, -Fe, replicate 2 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
8.6 99.0 GSM133979 Birnbaum_1-9_StageII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.62 1e-69 264 At1g13580 837919 LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) F:molecular_function unknown;P:N-terminal protein myristoylation;C:endoplasmic reticulum;MFOPV C.G. S.X.
0.03 5e-1 36 At5g39240 833920 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 5e-1 36 At4g29690 829090 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV C.G. S.X.
0.02 5e-1 36 At1g23340 838943 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB C.G. S.X.
0.01 2e+0 34 At4g39270 830083 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.02 2e+0 34 At3g19880 821525 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 7e-4 46 Glycine max GmaAffx.81044.1.S1_at BF715908 - - 8e-21 At1g13580 LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) C.G. S.X.
0.09 1e-6 54 Hordeum vulgare rbags12k11_s_at rbags12k11 - - 1e-6 At3g25540 LAG1 C.G. S.X.
0.15 6e-8 59 Oryza sativa Os02g0581300 AK071553.1 - ASC1 (Alternaria stem canker resistance protein) 5e-8 At3g25540 LAG1 C.G. S.X.
0.15 3e-3 44 Populus trichocarpa PtpAffx.207982.1.S1_s_at pmrna15845 hypothetical protein - 5e-28 At1g13580 LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) C.G. S.X.
0.18 5e-7 56 Triticum aestivum Ta.26017.1.A1_at CK212016 - - 6e-7 At3g25540 LAG1 C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1621490_at CF212781 hypothetical protein LOC100256024 - 4e-3 At5g48350 nucleic acid binding C.G. S.X.
0.02 8e-1 34 Zea mays Zm.7831.1.A1_at BM080062 hypothetical protein LOC100192532 - 1e+0 At3g25540 LAG1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00429 Sphingolipids synthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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