CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g25250

Gene name AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.49 63.5 At3g25250 822119 AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1) Arabidopsis protein kinase S.X. H.G.
0.83 91.4 At2g37430 818319 zinc finger (C2H2 type) family protein (ZAT11) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;MPOF S.X. H.G.
0.82 90.9 At1g14540 838016 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.81 90.4 At1g69930 843329 ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.76 87.4 At1g30370 839917 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMV S.X. H.G.
0.76 87.4 At4g28460 828963 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.74 86.1 At3g53600 824528 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;PMF S.X. H.G.
0.71 84.2 At5g24110 832476 WRKY30 member of WRKY Transcription Factor; Group III S.X. H.G.
0.70 83.5 At1g68765 843208 IDA (INFLORESCENCE DEFICIENT IN ABSCISSION) Encodes a small protein of 77 amino acids. Loss of function mutations are defective in the process of ethylene independent floral organ abscission. Although the mutants have a normal appearing abscission zone, the floral organs do not abscisce. The peptide appears to be secreted and may function as a ligand. Arabidopsis 35S:IDA lines constitutively overexpressing IDA exhibit earlier abscission of floral organs, showing that the abscission zones are responsive to IDA soon after the opening of the flowers. In addition, ectopic abscission was observed at the bases of the pedicel, branches of the inflorescence, and cauline leaves. The silique valves also dehisced prematurely. S.X. H.G.
0.70 83.5 At3g23220 821900 DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
221.6 100.0 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
219.0 100.0 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
212.6 100.0 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
203.7 100.0 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
190.4 100.0 E-MEXP-807-raw-cel-1173273088
171.8 100.0 E-MEXP-807-raw-cel-1173273223
157.3 99.9 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
155.7 99.9 E-MEXP-807-raw-cel-1173273252
155.1 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
153.3 99.9 E-MEXP-807-raw-cel-1173273116
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.49 1e-57 224 At4g13000 826913 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.04 4e-8 59 At1g51170 841540 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MOFPBVA C.G. S.X.
0.04 1e-5 52 At3g20830 821631 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MOFPBVA C.G. S.X.
0.05 2e-4 48 At2g26700 817211 PID2 (PINOID2) Encodes PID2, a homolog of PID. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons. C.G. S.X.
0.02 1e-2 42 At5g40030 834000 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MOPFBVA C.G. S.X.
0.02 4e-2 40 At1g79250 844265 AGC1.7 (AGC KINASE 1.7) F:kinase activity;P:pollen tube growth, unidimensional cell growth;C:unknown;MOPFBVA C.G. S.X.
0.01 2e-1 38 At4g39180 830073 SEC14 encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae C.G. S.X.
0.02 6e-1 36 At5g19650 832085 OFP8 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 8) F:unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.02 6e-1 36 At4g39840 830143 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFBPVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 3e-10 67 Glycine max Gma.8262.1.A1_at BU550168 - - 1e-10 At3g25250 AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1) C.G. S.X.
0.03 1e+0 34 Hordeum vulgare HB14L15r_at HB14L15r - - 1e+1 At5g42290 transcription activator-related C.G. S.X.
0.02 8e-2 40 Oryza sativa Os.10783.2.S1_x_at - - - 0 C.G. S.X.
0.14 4e-15 83 Populus trichocarpa PtpAffx.202694.1.S1_x_at pmrna5381 hypothetical protein - 3e-15 At3g25250 AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1) C.G. S.X.
0.02 3e+0 34 Triticum aestivum Ta.3753.1.S1_at BJ247323 - - 2e+1 At5g65220 ribosomal protein L29 family protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1614524_at CB981815 hypothetical protein LOC100261162 - 7e-9 At5g51545 LPA2 (low psii accumulation2) C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.440.1.A1_at AI676978 - - 2e-4 At1g54410 dehydrin family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage