CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g25230

Gene name ROF1 (ROTAMASE FKBP 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At3g25230 822117 ROF1 (ROTAMASE FKBP 1) Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family. It has three FKBP12-like domains, tetratricopeptide repeats, and a putative calmodulin binding domain. Modulates thermotolerance by interacting with HSP90.1 and affecting the accumulation of HsfA2-regulated sHSPs. S.X. H.G.
0.44 57.2 At5g09590 830818 MTHSC70-2 (MITOCHONDRIAL HSP70 2) heat shock protein 70 (Hsc70-5); nuclear S.X. H.G.
0.40 50.8 At3g12050 820379 Aha1 domain-containing protein F:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPB S.X. H.G.
0.23 19.3 At2g25140 817052 CLPB4 (CASEIN LYTIC PROTEINASE B4) Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Targeted to the mitochondrion, also referred to as ClpB-m. Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress. S.X. H.G.
0.11 4.1 At3g07090 819895 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
94.1 99.9 GSM131454 AtGen_6-9322_Heatstress-Roots-3.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
93.3 99.9 GSM131453 AtGen_6-9321_Heatstress-Roots-3.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
87.4 99.9 GSM131449 AtGen_6-9221_Heatstress-Roots-1.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
79.1 99.9 GSM131450 AtGen_6-9222_Heatstress-Roots-1.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
51.2 99.8 E-MEXP-1725-raw-cel-1669614634
50.2 99.8 GSM131448 AtGen_6-9212_Heatstress-Shoots-1.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
47.6 99.8 E-MEXP-1725-raw-cel-1669614623
46.4 99.8 E-MEXP-98-raw-cel-320188969
44.3 99.8 GSM284390 Arabidopsis GPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
44.1 99.8 GSM131447 AtGen_6-9211_Heatstress-Shoots-1.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.45 4e-83 309 At5g48570 834913 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding;P:protein folding;C:vacuole;BMOFPA C.G. S.X.
0.02 5e-2 40 At5g56260 835725 dimethylmenaquinone methyltransferase family protein F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM C.G. S.X.
0.01 2e-1 38 At5g16560 831518 KAN (KANADI) Encodes a KANADI protein (KAN) that regulates organ polarity in Arabidopsis. KAN is required for abaxial identity in both leaves and carpels, and encodes a nuclear-localized protein in the GARP family of putative transcription factors. Together with KAN2, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN2 and KAN4, KAN1 appears to be required for proper regulation of PIN1 in early embryogenesis. C.G. S.X.
0.01 2e-1 38 At1g43910 840990 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV C.G. S.X.
0.01 8e-1 36 At5g08650 830766 GTP-binding protein LepA, putative F:GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:chloroplast;BOMFPA C.G. S.X.
0.01 8e-1 36 At5g46420 834685 16S rRNA processing protein RimM family F:ribosome binding, nucleotidyltransferase activity;P:metabolic process, rRNA processing, ribosome biogenesis;C:chloroplast;BOMFP C.G. S.X.
0.01 8e-1 36 At4g31370 829264 FLA5 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 PRECURSOR) fasciclin-like arabinogalactan-protein, putative (FLA5) C.G. S.X.
0.01 8e-1 36 At3g14110 820628 FLU (FLUORESCENT IN BLUE LIGHT) Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis. Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 8e-45 182 Glycine max GmaAffx.81432.2.S1_at BF595545 - - 2e-45 At3g25230 ROF1 (ROTAMASE FKBP 1) C.G. S.X.
0.19 5e-13 75 Hordeum vulgare Contig1692_at Contig1692 - - 1e-12 At3g25230 ROF1 (ROTAMASE FKBP 1) C.G. S.X.
0.23 9e-24 113 Oryza sativa Os08g0525600 CB620654 - Rof1 6e-24 At3g25230 ROF1 (ROTAMASE FKBP 1) C.G. S.X.
0.34 1e-31 139 Populus trichocarpa PtpAffx.124689.1.S1_at CK111963 hypothetical protein - 4e-32 At3g25230 ROF1 (ROTAMASE FKBP 1) C.G. S.X.
0.20 4e-15 83 Triticum aestivum Ta.28955.1.S1_at BJ275294 peptidylprolyl isomerase - 5e-15 At3g25230 ROF1 (ROTAMASE FKBP 1) C.G. S.X.
0.42 4e-43 174 Vitis vinifera 1609010_at CB346849 hypothetical protein LOC100266654 - 4e-34 At5g48570 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative C.G. S.X.
0.29 1e-19 97 Zea mays Zm.2379.1.S1_at CK368590 peptidyl-prolyl isomerase - 3e-19 At3g25230 ROF1 (ROTAMASE FKBP 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009408 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
X GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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