CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g25190

Gene name nodulin, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.88 94.0 At3g25190 822112 nodulin, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA S.X. H.G.
0.71 84.2 At3g09220 820078 LAC7 (laccase 7) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). S.X. H.G.
0.70 83.5 At3g01420 821135 DOX1 Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. S.X. H.G.
0.67 81.6 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. S.X. H.G.
0.66 80.1 At5g63600 836480 FLS5 (FLAVONOL SYNTHASE 5) encodes a protein whose sequence is similar to flavonol synthase S.X. H.G.
0.63 78.1 At2g46750 819288 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA S.X. H.G.
0.61 76.7 At3g62040 825377 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA S.X. H.G.
0.60 75.7 At3g06390 819813 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.58 73.8 At3g14680 820696 CYP72A14 putative cytochrome P450 S.X. H.G.
0.58 73.8 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
165.3 100.0 GSM75520 slr-1 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
160.7 99.9 GSM75518 slr-1 6h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
143.8 99.9 GSM291128 root - 08% oxygen - 48h - B GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
124.2 99.9 GSM290827 root - 04% oxygen - 48h - B GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
120.2 99.9 GSM291118 root - 21% oxygen - 48h - B GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
118.2 99.9 GSM75517 slr-1 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
112.3 99.9 GSM75516 slr-1 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
103.3 99.9 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
91.3 99.9 GSM75511 Col-0 6h MOCK replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
78.8 99.9 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 1e-6 54 At1g21140 838710 nodulin, putative F:unknown;P:biological_process unknown;C:unknown;BOPFA C.G. S.X.
0.11 9e-5 48 At3g43660 823468 nodulin, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA C.G. S.X.
0.19 9e-5 48 At3g43630 823461 nodulin, putative F:unknown;P:biological_process unknown;C:unknown;BOPFA C.G. S.X.
0.02 2e-2 40 At3g10670 820236 ATNAP7 Plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis. Involved in the biogenesis and/or repair of oxidatively damaged Fe�S clusters. Expressed in embryos and meristems. C.G. S.X.
0.04 8e-2 38 At3g49330 824095 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.04 8e-2 38 At1g12080 837760 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.02 8e-2 38 At1g51310 841554 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase F:tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity;P:tRNA processing, RNA processing;C:chloroplast, cytoplasm;BOMFP C.G. S.X.
0.01 3e-1 36 At5g45840 834624 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 8e-6 52 Glycine max Gma.4779.1.A1_at AW396769 - - 4e-6 At3g25190 nodulin, putative C.G. S.X.
0.04 3e-3 42 Hordeum vulgare Contig12110_s_at Contig12110 - - 3e-1 At1g12080 unknown protein C.G. S.X.
0.03 2e-1 38 Oryza sativa OsAffx.4180.1.S1_at - - - 0 C.G. S.X.
0.09 5e-7 56 Populus trichocarpa PtpAffx.210102.1.S1_at pmrna19896 hypothetical protein - 4e-7 At3g25190 nodulin, putative C.G. S.X.
0.04 3e-1 36 Triticum aestivum TaAffx.110830.1.S1_at CA653547 - - 8e-2 At2g20613 unknown protein C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1619557_at CB969263 - - 2e-5 At5g01640 PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5) C.G. S.X.
0.02 6e-1 34 Zea mays Zm.18074.1.A1_at CO521107 - - 4e-4 At3g50980 XERO1 (DEHYDRIN XERO 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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