Gene omics information

Query gene ID At3g25190
Gene name nodulin, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8894.0At3g25190822112nodulin, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAS.X.H.G.
0.7184.2At3g09220820078LAC7 (laccase 7)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).S.X.H.G.
0.7083.5At3g01420821135DOX1Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.S.X.H.G.
0.6781.6At5g59520836071ZIP2encodes a metal ion transporter whose expression is regulated by copper.S.X.H.G.
0.6680.1At5g63600836480FLS5 (FLAVONOL SYNTHASE 5)encodes a protein whose sequence is similar to flavonol synthaseS.X.H.G.
0.6378.1At2g46750819288FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMAS.X.H.G.
0.6176.7At3g62040825377catalytic/ hydrolaseF:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFAS.X.H.G.
0.6075.7At3g06390819813integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5873.8At3g14680820696CYP72A14putative cytochrome P450S.X.H.G.
0.5873.8At2g47200819333unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
165.3100.0GSM75520slr-1 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
160.799.9GSM75518slr-1 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
143.899.9GSM291128root - 08% oxygen - 48h - BGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
124.299.9GSM290827root - 04% oxygen - 48h - BGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
120.299.9GSM291118root - 21% oxygen - 48h - BGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
118.299.9GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
112.399.9GSM75516slr-1 0h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
103.399.9GSM75519slr-1 0h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
91.399.9GSM75511Col-0 6h MOCK replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
78.899.9GSM75521slr-1 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.141e-654At1g21140838710nodulin, putativeF:unknown;P:biological_process unknown;C:unknown;BOPFAC.G.S.X.
0.119e-548At3g43660823468nodulin, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAC.G.S.X.
0.199e-548At3g43630823461nodulin, putativeF:unknown;P:biological_process unknown;C:unknown;BOPFAC.G.S.X.
0.022e-240At3g10670820236ATNAP7Plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis. Involved in the biogenesis and/or repair of oxidatively damaged FeS clusters. Expressed in embryos and meristems.C.G.S.X.
0.048e-238At3g49330824095invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.048e-238At1g12080837760unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAC.G.S.X.
0.028e-238At1g51310841554tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferaseF:tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity;P:tRNA processing, RNA processing;C:chloroplast, cytoplasm;BOMFPC.G.S.X.
0.013e-136At5g45840834624leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.098e-652Glycine maxGma.4779.1.A1_atAW396769--4e-6At3g25190nodulin, putativeC.G.S.X.
0.043e-342Hordeum vulgareContig12110_s_atContig12110--3e-1At1g12080unknown proteinC.G.S.X.
0.032e-138Oryza sativaOsAffx.4180.1.S1_at---0C.G.S.X.
0.095e-756Populus trichocarpaPtpAffx.210102.1.S1_atpmrna19896hypothetical protein-4e-7At3g25190nodulin, putativeC.G.S.X.
0.043e-136Triticum aestivumTaAffx.110830.1.S1_atCA653547--8e-2At2g20613unknown proteinC.G.S.X.
0.034e-134Vitis vinifera1619557_atCB969263--2e-5At5g01640PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5)C.G.S.X.
0.026e-134Zea maysZm.18074.1.A1_atCO521107--4e-4At3g50980XERO1 (DEHYDRIN XERO 1)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage