Gene omics information

Query gene ID At3g25160
Gene name ER lumen protein retaining receptor family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7284.8At3g25160822107ER lumen protein retaining receptor family proteinF:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPFS.X.H.G.
0.8693.1At1g65880842900BZO1 (BENZOYLOXYGLUCOSINOLATE 1)Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds.S.X.H.G.
0.7486.1At1g73290843663scpl5 (serine carboxypeptidase-like 5)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOS.X.H.G.
0.7284.8At1g25410839127ATIPT6AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cdsS.X.H.G.
0.7284.8At5g51490835223pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOMS.X.H.G.
0.7083.5At3g12203820399scpl17 (serine carboxypeptidase-like 17)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBS.X.H.G.
0.6882.2At5g49190834978SUS2 (SUCROSE SYNTHASE 2)Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency.S.X.H.G.
0.6781.6At4g25980828704cationic peroxidase, putativeF:peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOMS.X.H.G.
0.6781.6At5g47670834818NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)F:transcription activator binding, transcription factor activity, transcription activator activity;P:positive regulation of gene-specific transcription, regulation of transcription;C:nucleus, intracellular;MPFOAS.X.H.G.
0.6378.1At3g04200819575germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
320.2100.0GSM10453WT Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
276.4100.0GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
261.4100.0GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
244.3100.0E-ATMX-1-raw-cel-1112746154
229.1100.0GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
223.4100.0GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
218.6100.0GSM131696ATGE_79_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
211.5100.0GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
192.5100.0E-ATMX-1-raw-cel-1112746095
124.499.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.077e-961At1g75760843909ER lumen protein retaining receptor family proteinF:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPFC.G.S.X.
0.047e-342At2g21190816655ER lumen protein retaining receptor family proteinF:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPFC.G.S.X.
0.123e-240At4g38790830034ER lumen protein retaining receptor family proteinF:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPFC.G.S.X.
0.024e-136At3g59490825118unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POC.G.S.X.
0.014e-136At1g06520837163GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1)Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels.C.G.S.X.
0.012e+034At5g23050832369AAE17 (ACYL-ACTIVATING ENZYME 17)F:catalytic activity, ligase activity;P:metabolic process;C:cellular_component unknown;BOMFAPC.G.S.X.
0.022e+034At3g57800825530basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.069e-342Glycine maxGma.15905.1.S1_atCD416825--1e-41At4g38790ER lumen protein retaining receptor family proteinC.G.S.X.
0.071e-240Hordeum vulgareContig14455_atContig14455--4e-16At1g75760ER lumen protein retaining receptor family proteinC.G.S.X.
0.083e-344Oryza sativaOs08g0548200AK102617.1-ER lumen protein retaining receptor-like protein2e-22At1g19970ER lumen protein retaining receptor family proteinC.G.S.X.
0.092e-344Populus trichocarpaPtpAffx.202686.1.S1_atpmrna5361hypothetical protein-1e-4At4g38790ER lumen protein retaining receptor family proteinC.G.S.X.
0.072e-654Triticum aestivumTa.5556.2.A1_atCA683472--2e-12At1g75760ER lumen protein retaining receptor family proteinC.G.S.X.
0.161e-446Vitis vinifera1622323_atCB969061hypothetical protein LOC100265497-3e-4At3g25160ER lumen protein retaining receptor family proteinC.G.S.X.
0.101e-550Zea maysZm.15768.1.A1_atCD446659hypothetical protein LOC100194013-3e-14At2g21190ER lumen protein retaining receptor family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0015031The directed movement of proteins into, out of, within or between cells.
LGO:0006621The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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