CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g25060

Gene name pentatricopeptide (PPR) repeat-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.42 53.9 At3g25060 822097 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMB S.X. H.G.
0.40 50.8 At1g63280 842634 serpin-related / serine protease inhibitor-related F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:unknown;MPBOAV S.X. H.G.
0.10 3.4 At1g02710 839483 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA S.X. H.G.
0.08 2.3 At4g33900 829533 kelch repeat-containing F-box family protein F:unknown;P:unknown;C:cellular_component unknown;MPOBVA S.X. H.G.
0.06 1.4 At4g05140 825861 equilibrative nucleoside transporter family protein F:nucleoside transmembrane transporter activity;P:transport;C:membrane;MOPFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
970.9 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
389.0 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
290.5 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
219.3 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
195.6 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
193.3 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
182.5 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
178.1 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
176.1 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
174.3 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-3 44 At3g49740 824136 pentatricopeptide (PPR) repeat-containing protein F:binding;P:biological_process unknown;C:unknown;POFMB C.G. S.X.
0.01 1e-2 42 At4g39530 830107 pentatricopeptide (PPR) repeat-containing protein F:binding;P:biological_process unknown;C:unknown;POMFBA C.G. S.X.
0.01 1e-2 42 At4g37170 829871 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB C.G. S.X.
0.01 6e-2 40 At4g32430 829378 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBA C.G. S.X.
0.01 6e-2 40 At1g64310 842737 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMF C.G. S.X.
0.02 6e-2 40 At1g26900 838376 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:mitochondrion;POMFB C.G. S.X.
0.01 2e-1 38 At5g09950 830856 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POFMB C.G. S.X.
0.01 2e-1 38 At5g16860 831549 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.01 2e-1 38 At5g39680 833964 EMB2744 (EMBRYO DEFECTIVE 2744) F:unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;POMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max Gma.15155.3.S1_a_at BE059235 - - 8e-1 At3g25580 thioredoxin-related C.G. S.X.
0.01 7e+0 32 Hordeum vulgare HVSMEf0019G08r2_s_at HVSMEf0019G08r2 - - 5e-2 At4g03940 unknown protein C.G. S.X.
0.01 1e-1 40 Oryza sativa Os.53656.1.S1_at - - - 0 C.G. S.X.
0.05 8e-5 50 Populus trichocarpa PtpAffx.202681.1.S1_at pmrna5345 hypothetical protein - 6e-5 At3g25060 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 9e-1 36 Triticum aestivum TaAffx.51627.1.S1_at CA721528 - - 1e-2 At5g61800 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1622888_s_at CF202816.1 hypothetical protein LOC100246501 - 1e+0 At5g64040 PSAN C.G. S.X.
0.01 6e+0 32 Zea mays Zm.5031.1.A1_at AI600468 - - 2e-2 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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