CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g25050

Gene name XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g25050 822096 XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3) encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment. S.X. H.G.
0.97 97.6 At1g20120 838601 family II extracellular lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAV S.X. H.G.
0.97 97.6 At1g75910 843924 EXL4 member of Lipase proteins S.X. H.G.
0.97 97.6 At1g06260 837137 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF S.X. H.G.
0.91 95.6 At1g75920 843925 family II extracellular lipase 5 (EXL5) F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOM S.X. H.G.
0.91 95.6 At2g03850 814911 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFA S.X. H.G.
0.90 95.1 At1g68875 843220 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.89 94.6 At1g75940 843927 ATA27 encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen. S.X. H.G.
0.83 91.4 At2g03740 814901 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBMOFA S.X. H.G.
0.79 89.1 At1g28375 839734 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
135.3 99.9 GSM62694 Columbia flowers_stage 1-10 GSE2848 Auxin Response Factor mediated flower gene expression
123.4 99.9 GSM62698 arf6/arf6 ARF8/arf8 flowers_stage 1-10 GSE2848 Auxin Response Factor mediated flower gene expression
95.9 99.9 E-MEXP-849-raw-cel-1181980958
93.3 99.9 E-MEXP-849-raw-cel-1181980966
92.3 99.9 GSM47019 Ler 9 GSE2473 Small RNA biogenesis mutants
87.7 99.9 GSM47033 dcl3-1 23 GSE2473 Small RNA biogenesis mutants
82.8 99.9 GSM47031 dcl3-121 GSE2473 Small RNA biogenesis mutants
81.0 99.9 E-MEXP-849-raw-cel-1181980974
77.1 99.9 GSM47032 dcl3-1 22 GSE2473 Small RNA biogenesis mutants
76.9 99.9 GSM47022 Col-0 12 GSE2473 Small RNA biogenesis mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.16 1e-13 77 At4g13090 826923 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO C.G. S.X.
0.20 5e-4 46 At4g13080 826922 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO C.G. S.X.
0.03 3e-2 40 At5g13870 831233 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) EXGT-A4, endoxyloglucan transferase, C.G. S.X.
0.03 1e-1 38 At3g48580 824018 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA C.G. S.X.
0.02 4e-1 36 At4g25820 828687 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer. C.G. S.X.
0.03 4e-1 36 At4g14130 827051 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) xyloglucan endotransglycosylase-related protein (XTR7) C.G. S.X.
0.03 4e-1 36 At3g23730 821955 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO C.G. S.X.
0.03 4e-1 36 At1g32170 840109 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) xyloglucan endotransglycosylase-related protein (XTR4) C.G. S.X.
0.05 4e-1 36 At1g11545 837698 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 34 Glycine max GmaAffx.34697.1.S1_at AW433263 - - 2e-3 At2g06850 EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig25673_at Contig25673 - - 2e-1 At3g25050 XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3) C.G. S.X.
0.03 1e-2 42 Oryza sativa Os06g0696600 AK105934.1 - Xyloglucan endo-transglycosylase homolog 9e-3 At4g25810 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) C.G. S.X.
0.06 2e-7 57 Populus trichocarpa PtpAffx.56651.1.A1_at CV236471 hypothetical protein - 8e-12 At5g57560 TCH4 (Touch 4) C.G. S.X.
0.03 7e-3 42 Triticum aestivum Ta.14995.1.S1_x_at CA718825 - - 2e-3 At4g30270 MERI5B (meristem-5) C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1617688_at CK138201.1 hypothetical protein LOC100241560 - 6e-9 At4g25650 ACD1-LIKE (ACD1-LIKE) C.G. S.X.
0.03 3e-3 42 Zea mays Zm.704.1.S1_at U15781.1 xyloglucan endotransglycosylase homolog1 - 3e-6 At5g57550 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0048573 A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
C GO:0009832 The chemical reactions and pathways resulting in the formation of the cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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