Gene omics information

Query gene ID At3g25050
Gene name XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g25050822096XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment.S.X.H.G.
0.9797.6At1g20120838601family II extracellular lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAVS.X.H.G.
0.9797.6At1g75910843924EXL4member of Lipase proteinsS.X.H.G.
0.9797.6At1g06260837137cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFS.X.H.G.
0.9195.6At1g75920843925family II extracellular lipase 5 (EXL5)F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOMS.X.H.G.
0.9195.6At2g03850814911late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFAS.X.H.G.
0.9095.1At1g68875843220unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.8994.6At1g75940843927ATA27encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen.S.X.H.G.
0.8391.4At2g03740814901late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBMOFAS.X.H.G.
0.7989.1At1g28375839734unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
135.399.9GSM62694Columbia flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expression
123.499.9GSM62698arf6/arf6 ARF8/arf8 flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expression
95.999.9E-MEXP-849-raw-cel-1181980958
93.399.9E-MEXP-849-raw-cel-1181980966
92.399.9GSM47019Ler 9GSE2473Small RNA biogenesis mutants
87.799.9GSM47033dcl3-1 23GSE2473Small RNA biogenesis mutants
82.899.9GSM47031dcl3-121GSE2473Small RNA biogenesis mutants
81.099.9E-MEXP-849-raw-cel-1181980974
77.199.9GSM47032dcl3-1 22GSE2473Small RNA biogenesis mutants
76.999.9GSM47022Col-0 12GSE2473Small RNA biogenesis mutants
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.161e-1377At4g13090826923xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOC.G.S.X.
0.205e-446At4g13080826922xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOC.G.S.X.
0.033e-240At5g13870831233EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)EXGT-A4, endoxyloglucan transferase,C.G.S.X.
0.031e-138At3g48580824018xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOAC.G.S.X.
0.024e-136At4g25820828687XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer.C.G.S.X.
0.034e-136At4g14130827051XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)xyloglucan endotransglycosylase-related protein (XTR7)C.G.S.X.
0.034e-136At3g23730821955xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOC.G.S.X.
0.034e-136At1g32170840109XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)xyloglucan endotransglycosylase-related protein (XTR4)C.G.S.X.
0.054e-136At1g11545837698xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e+034Glycine maxGmaAffx.34697.1.S1_atAW433263--2e-3At2g06850EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE)C.G.S.X.
0.032e-136Hordeum vulgareContig25673_atContig25673--2e-1At3g25050XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)C.G.S.X.
0.031e-242Oryza sativaOs06g0696600AK105934.1-Xyloglucan endo-transglycosylase homolog9e-3At4g25810XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)C.G.S.X.
0.062e-757Populus trichocarpaPtpAffx.56651.1.A1_atCV236471hypothetical protein-8e-12At5g57560TCH4 (Touch 4)C.G.S.X.
0.037e-342Triticum aestivumTa.14995.1.S1_x_atCA718825--2e-3At4g30270MERI5B (meristem-5)C.G.S.X.
0.042e+032Vitis vinifera1617688_atCK138201.1hypothetical protein LOC100241560-6e-9At4g25650ACD1-LIKE (ACD1-LIKE)C.G.S.X.
0.033e-342Zea maysZm.704.1.S1_atU15781.1xyloglucan endotransglycosylase homolog1-3e-6At5g57550XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0048573A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
CGO:0009832The chemical reactions and pathways resulting in the formation of the cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00412Link to KaPPA-View 4Glycoside Hydrolase
00437Link to KaPPA-View 4Xyloglucan biosynthesis and modification



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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