CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g24670

Gene name pectate lyase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g24670 822063 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO S.X. H.G.
1.00 100.0 At4g09990 826590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB S.X. H.G.
0.80 89.8 At2g47540 819367 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.80 89.8 At5g49270 834987 SHV2 (SHAVEN 2) Involved in successfully establishing tip growth in root hairs. S.X. H.G.
0.57 73.8 At2g34910 818056 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
261.4 100.0 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
215.7 100.0 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
173.8 100.0 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
173.0 100.0 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
154.2 99.9 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
145.2 99.9 GSM184844 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
144.1 99.9 GSM133983 Birnbaum_1-13_StageIII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
116.6 99.9 GSM184843 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
94.2 99.9 GSM265422 Arabidopsis, root, longitudinal zone 3, standard conditions, rep1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
74.1 99.9 GSM184909 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.75 0 684 At4g13210 826936 lyase/ pectate lyase F:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;PBFO C.G. S.X.
0.55 2e-105 383 At5g48900 834948 pectate lyase family protein F:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFO C.G. S.X.
0.59 2e-90 333 At3g07010 819886 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO C.G. S.X.
0.27 5e-51 202 At3g24230 822010 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO C.G. S.X.
0.37 5e-51 202 At1g04680 839452 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFO C.G. S.X.
0.25 3e-49 196 At4g13710 827005 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO C.G. S.X.
0.10 2e-31 137 At5g63180 836439 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFO C.G. S.X.
0.17 2e-29 131 At4g24780 828580 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFO C.G. S.X.
0.18 2e-29 131 At1g67750 843100 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 1e-40 169 Glycine max Gma.2210.1.S1_at AW309542 - - 1e-67 At5g48900 pectate lyase family protein C.G. S.X.
0.09 6e-12 71 Hordeum vulgare Contig11004_at Contig11004 - - 3e-22 At3g07010 pectate lyase family protein C.G. S.X.
0.14 2e-18 95 Oryza sativa Os04g0137100 AK060609.1 - Pectate lyase (Fragment) 8e-6 At3g07010 pectate lyase family protein C.G. S.X.
0.45 4e-40 167 Populus trichocarpa PtpAffx.211973.1.S1_at pmrna23517 hypothetical protein - 2e-40 At3g24670 pectate lyase family protein C.G. S.X.
0.03 7e-4 46 Triticum aestivum Ta.11160.1.S1_s_at BQ169530 - - 5e-14 At3g07010 pectate lyase family protein C.G. S.X.
0.22 3e-37 155 Vitis vinifera 1618576_at BQ800615 pectate lyase PL1-like - 4e-124 At4g13710 pectate lyase family protein C.G. S.X.
0.07 1e-3 44 Zea mays ZmAffx.854.1.A1_at AI770665 - - 8e-7 At5g48900 pectate lyase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00040 Pentose and glucuronate interconversions
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