CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g24510

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.86 93.1 At3g24510 822044 - Encodes a defensin-like (DEFL) family protein. S.X. H.G.
0.96 97.3 At5g06500 830538 AGL96 (AGAMOUS-LIKE 96) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO S.X. H.G.
0.94 96.7 At2g06090 815164 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.94 96.7 At2g30090 817560 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MPBAO S.X. H.G.
0.94 96.7 At5g39260 833922 ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21) expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) S.X. H.G.
0.94 96.7 At1g13680 837929 phospholipase C/ phosphoric diester hydrolase F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBM S.X. H.G.
0.94 96.7 At1g44130 841016 nucellin protein, putative F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMF S.X. H.G.
0.94 96.7 At5g46950 834741 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.93 96.4 At1g64830 842791 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOB S.X. H.G.
0.93 96.4 At1g22015 838806 DD46 F:transferase activity, transferring hexosyl groups, galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
996.1 100.0 GSM284388 Arabidopsis GMPE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
904.8 100.0 GSM311276 Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
591.1 100.0 GSM311275 Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
453.0 100.0 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
441.8 100.0 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
304.5 100.0 GSM311277 Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
237.1 100.0 GSM311278 Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
230.4 100.0 GSM284390 Arabidopsis GPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
190.5 100.0 GSM133781 Lindsey_1-6_globular-basal_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
164.9 100.0 GSM284391 Arabidopsis GPE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.29 1e-17 89 At3g24513 3768920 - Encodes a defensin-like (DEFL) family protein. C.G. S.X.
0.33 2e-6 52 At3g24508 3768919 - Encodes a defensin-like (DEFL) family protein. C.G. S.X.
0.01 1e-1 36 At5g48060 834858 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF C.G. S.X.
0.04 2e+0 32 At5g45550 834591 mob1/phocein family protein F:protein binding;P:biological_process unknown;C:nucleus;MFOP C.G. S.X.
0.02 2e+0 32 At5g15110 831363 lyase/ pectate lyase F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO C.G. S.X.
0.01 2e+0 32 At5g44290 834452 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 7e-1 34 Glycine max Gma.12041.1.S1_at BG650205 - - 7e-1 At3g24510 - C.G. S.X.
0.06 4e+0 30 Hordeum vulgare HT08E21u_at HT08E21u - - 3e+0 At3g03840 auxin-responsive protein, putative C.G. S.X.
0.04 4e+0 32 Oryza sativa Os07g0123800 AK109248.1 - Conserved hypothetical protein 2e+0 At1g10140 - C.G. S.X.
0.07 7e-1 34 Populus trichocarpa PtpAffx.213701.1.S1_at pmrna26741 hypothetical protein - 1e-16 Atcg01060 - C.G. S.X.
0.04 5e-1 34 Triticum aestivum TaAffx.81108.1.S1_at CA689415 - - 1e+0 At3g24510 - C.G. S.X.
0.04 2e+0 30 Vitis vinifera 1608713_at CD801102 hypothetical protein LOC100252975 - 3e+0 At3g26470 - C.G. S.X.
0.04 8e-1 32 Zea mays Zm.6879.1.A1_at AI065542 - - 4e+0 At3g24510 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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