CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g24490

Gene name transcription factor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At3g24490 822039 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFBV S.X. H.G.
1.00 100.0 At3g29310 822589 calmodulin-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFPBV S.X. H.G.
0.89 94.6 At1g18950 838476 aminoacyl-tRNA synthetase family F:aminoacyl-tRNA ligase activity;P:biological_process unknown;C:unknown;MOFBPVA S.X. H.G.
0.73 85.5 At2g06210 815177 ELF8 (EARLY FLOWERING 8) Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. S.X. H.G.
0.67 81.6 At1g68790 843210 LINC3 (LITTLE NUCLEI3) F:unknown;P:biological_process unknown;C:nucleolus;MOBFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
188.7 100.0 GSM284385 Arabidopsis GEP6 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
150.8 99.9 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
131.3 99.9 GSM284384 Arabidopsis GEP5 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
131.3 99.9 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
119.4 99.9 GSM311288 Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
118.0 99.9 GSM311287 Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
111.9 99.9 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
104.3 99.9 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
96.0 99.9 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
92.7 99.9 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-3 44 At2g16910 816194 AMS (ABORTED MICROSPORES) Sporophytic male sterile; MYC Transcription Factor C.G. S.X.
0.01 8e-3 42 At4g14920 827150 DNA binding / protein binding / zinc ion binding F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO C.G. S.X.
0.02 8e-3 42 At3g56590 824826 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVA C.G. S.X.
0.02 8e-3 42 At3g26932 822310 DRB3 (dsRNA-binding protein 3) F:double-stranded RNA binding, RNA binding;P:biological_process unknown;C:intracellular;BPMOV C.G. S.X.
0.02 3e-2 40 At5g22200 832281 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;P C.G. S.X.
0.02 3e-2 40 At4g02860 828159 catalytic F:catalytic activity;P:biosynthetic process;C:cellular_component unknown;BOMFPA C.G. S.X.
0.03 3e-2 40 At4g28840 829005 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-3 44 Glycine max GmaAffx.33081.1.S1_s_at BQ453706 - - 3e+0 At1g28306 - C.G. S.X.
0.02 6e-2 38 Hordeum vulgare HS17C12u_at HS17C12u - - 7e-2 At1g18750 AGL65 (AGAMOUS-LIKE 65) C.G. S.X.
0.03 1e-3 46 Oryza sativa Os06g0537600 AK063014.1 - Zn-finger, RING domain containing protein 9e-2 At5g11930 glutaredoxin family protein C.G. S.X.
0.06 5e-5 50 Populus trichocarpa PtpAffx.200531.1.S1_at pmrna1064 hypothetical protein - 3e-5 At3g24490 transcription factor C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.104482.1.S1_at CB884223 - - 4e-1 At5g05710 pleckstrin homology (PH) domain-containing protein C.G. S.X.
0.11 4e-8 57 Vitis vinifera 1609340_at CF415722 hypothetical protein LOC100245606 - 1e-7 At3g24490 transcription factor C.G. S.X.
0.04 5e-2 38 Zea mays Zm.6201.1.A1_at BE643575 - - 1e-1 At3g50690 leucine-rich repeat family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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