CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g24290

Gene name AMT1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.62 77.3 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA S.X. H.G.
0.80 89.8 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. S.X. H.G.
0.73 85.5 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. S.X. H.G.
0.70 83.5 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM S.X. H.G.
0.63 78.1 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.56 73.0 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.53 68.6 At5g05400 830422 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA S.X. H.G.
0.52 67.4 At5g40510 834049 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA S.X. H.G.
0.46 59.8 At2g28960 817445 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.46 59.8 At2g44010 819006 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
124.9 99.9 E-MEXP-828-raw-cel-1156922485
115.2 99.9 E-MEXP-828-raw-cel-1156922438
110.9 99.9 GSM157306 Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
96.0 99.9 E-MEXP-828-raw-cel-1156922509
93.3 99.9 E-MEXP-828-raw-cel-1156922296
78.3 99.9 GSM157305 Gan_1-1_wildtype-nitrate-minus(WNM)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
75.7 99.9 E-MEXP-828-raw-cel-1156922416
66.6 99.8 GSM157307 Gan_1-2_mutant-nitrate-minus(ANM)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
64.3 99.8 E-MEXP-828-raw-cel-1156922386
52.6 99.8 E-MEXP-828-raw-cel-1156922455
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.85 0 1487 At3g24300 822018 AMT1 Encodes a plasma membrane localized ammonium transporter. C.G. S.X.
0.53 3e-40 167 At4g13510 826983 AMT1 Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake. C.G. S.X.
0.23 7e-38 159 At1g64780 842786 ATAMT1 encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root. C.G. S.X.
0.25 4e-24 113 At4g28700 828988 AMT1 F:high affinity secondary active ammonium transmembrane transporter activity, ammonium transmembrane transporter activity;P:transport;C:plasma membrane, membrane;OBMFPA C.G. S.X.
0.02 5e-2 40 At1g03850 839392 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:response to cytokinin stimulus;C:unknown;PFB C.G. S.X.
0.02 2e-1 38 At4g04404 825766 zinc finger (C2H2 type) family protein F:zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MPO C.G. S.X.
0.01 7e-1 36 At5g59050 836022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max GmaAffx.81682.1.S1_at BQ741516 - - 2e+0 At5g37690 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.02 6e+0 32 Hordeum vulgare Contig3967_at Contig3967 - - 6e-16 At5g47040 LON2 (LON PROTEASE 2) C.G. S.X.
0.15 1e-13 79 Oryza sativa Os02g0620500 9630.m03934 - High affinity ammonium transporter 3e-19 At1g64780 ATAMT1 C.G. S.X.
0.29 8e-17 89 Populus trichocarpa PtpAffx.202713.1.S1_at pmrna5432 ammonium transporter - 6e-17 At3g24290 AMT1 C.G. S.X.
0.14 1e-18 95 Triticum aestivum Ta.12823.1.S1_at CA638403 Ammonium transporter Amt1;1 - 2e-20 At4g13510 AMT1 C.G. S.X.
0.04 2e-1 36 Vitis vinifera 1610744_at CF415597 hypothetical protein LOC100258016 - 1e+0 At2g47170 ARF1A1C C.G. S.X.
0.02 3e-1 36 Zea mays Zm.16560.1.A1_at CF384462 - - 6e+0 At1g67920 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0015696 The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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