Gene omics information

Query gene ID At3g24230
Gene name pectate lyase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At3g24230822010pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOS.X.H.G.
0.8994.6At1g21950838798unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7385.5At1g52440841675-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5065.3At2g27390817284proline-rich family proteinF:structural constituent of cell wall;P:biological_process unknown;C:cellular_component unknown;MPBOFVAS.X.H.G.
0.2014.4At1g51300841553acyl-protein thioesterase-relatedF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MPBOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
458.7100.0GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
235.7100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
228.6100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
227.8100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
199.0100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
193.0100.0GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
188.6100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
188.0100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
183.1100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
165.7100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.633e-80299At4g13710827005pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
0.275e-51202At3g24670822063pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
0.273e-37157At3g07010819886pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
0.214e-33143At4g13210826936lyase/ pectate lyaseF:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;PBFOC.G.S.X.
0.132e-29131At1g67750843100pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOC.G.S.X.
0.124e-27123At5g63180836439pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFOC.G.S.X.
0.144e-24113At3g27400822361pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOC.G.S.X.
0.296e-23109At5g48900834948pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFOC.G.S.X.
0.115e-1789At4g24780828580pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.289e-35149Glycine maxGma.11298.3.S1_a_atBE059139--9e-100At4g13710pectate lyase family proteinC.G.S.X.
0.113e-2099Hordeum vulgareContig11004_atContig11004--3e-22At3g07010pectate lyase family proteinC.G.S.X.
0.132e-21105Oryza sativaOs04g0137100AK060609.1-Pectate lyase (Fragment)8e-6At3g07010pectate lyase family proteinC.G.S.X.
0.388e-26119Populus trichocarpaPtpAffx.1316.2.S1_s_atCA927435hypothetical protein-2e-152At4g13710pectate lyase family proteinC.G.S.X.
0.062e-757Triticum aestivumTa.11160.1.S1_s_atBQ169530--5e-14At3g07010pectate lyase family proteinC.G.S.X.
0.224e-49194Vitis vinifera1618576_atBQ800615pectate lyase PL1-like-4e-124At4g13710pectate lyase family proteinC.G.S.X.
0.075e-342Zea maysZmAffx.854.1.A1_atAI770665--8e-7At5g48900pectate lyase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00421Link to KaPPA-View 4Polysaccharide lyases



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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