CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g24090

Gene name glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g24090 821995 glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase F:sugar binding, transaminase activity, glutamine-fructose-6-phosphate transaminase (isomerizing) activity;P:carbohydrate biosynthetic process, carbohydrate metabolic process, metabolic process;C:cytoplasm;OBMAFPV S.X. H.G.
0.59 74.7 At1g04980 839355 ATPDIL2-2 (PDI-LIKE 2-2) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response. S.X. H.G.
0.53 68.6 At1g14360 837998 UTR3 (UDP-GALACTOSE TRANSPORTER 3) F:pyrimidine nucleotide sugar transmembrane transporter activity;P:unknown;C:endomembrane system;MOPF S.X. H.G.
0.52 67.4 At3g62600 825434 ATERDJ3B J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. S.X. H.G.
0.50 65.3 At5g61790 836301 calnexin 1 (CNX1) F:unfolded protein binding, calcium ion binding;P:protein folding;C:in 8 components;MOPFBVA S.X. H.G.
0.47 61.2 At2g25110 817049 SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum, membrane;FMOP S.X. H.G.
0.38 46.7 At1g09210 837441 calreticulin 2 (CRT2) F:unfolded protein binding, calcium ion binding;P:response to oxidative stress, response to salt stress;C:mitochondrion, endoplasmic reticulum, vacuole;MOFPBVA S.X. H.G.
0.29 30.3 At4g24190 828520 SHD (SHEPHERD) encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat. Endoplasmin supports the protein secretory pathway and has a role in proliferating tissues. S.X. H.G.
0.21 15.8 At5g47420 834789 - F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;BOAPF S.X. H.G.
0.04 0.9 At3g07680 819959 emp24/gp25L/p24 family protein F:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:endomembrane system, integral to membrane, membrane;MFPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
104.6 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
95.9 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
85.2 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
81.0 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.4 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
79.0 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
78.3 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
77.7 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
75.3 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
70.9 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-2 42 At3g25910 822188 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;MPOFBV C.G. S.X.
0.01 2e-2 42 At2g34230 817984 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.01 7e-2 40 At5g45200 834556 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.01 7e-2 40 At5g40890 834090 ATCLC-A (CHLORIDE CHANNEL A) Encodes a member of the voltage-dependent chloride channel. Also functions as a NO3-/H+ exchanger that serves to accumulate nitrate nutrient in vacuoles. Mutants homozygous for the T-DNA insertion mutation have reduced nitrate uptake capacity in high nitrate environment and exhibit hypersensitivity to chlorate. C.G. S.X.
0.01 7e-2 40 At2g28270 817373 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 3e-1 38 At5g59650 836086 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 3e-1 38 At5g17910 831659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPVA C.G. S.X.
0.01 3e-1 38 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 4e-35 151 Glycine max GmaAffx.34474.1.S1_at BE610143 - - 8e-36 At3g24090 glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase C.G. S.X.
0.06 8e-6 52 Hordeum vulgare Contig18334_at Contig18334 - - 8e-6 At3g24090 glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase C.G. S.X.
0.06 9e-12 73 Oryza sativa Os12g0131100 AK105856.1 - Glucosamine--fructose-6-phosphate aminotransferase[isomerizing] (EC 2.6.1.16) (Hexosephosphateaminotransferase) (D-fructose-6- phosphateamidotransferase) (GFAT) 3e-12 At3g24090 glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase C.G. S.X.
0.40 6e-77 289 Populus trichocarpa PtpAffx.56923.1.S1_at BI123150 hypothetical protein - 2e-77 At3g24090 glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase C.G. S.X.
0.14 3e-4 48 Triticum aestivum Ta.4815.1.S1_at CA698713 - - 2e-4 At3g24090 glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase C.G. S.X.
0.24 8e-42 171 Vitis vinifera 1620732_at CD012505 - - 1e-41 At3g24090 glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase C.G. S.X.
0.21 5e-16 85 Zea mays Zm.11907.1.S1_at CK370738 hypothetical protein LOC100194010 - 2e-15 At3g24090 glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
L GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00250 Alanine, aspartate and glutamate metabolism
00520 Amino sugar and nucleotide sugar metabolism
01100 Metabolic pathways
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