Gene omics information

Query gene ID At3g23940
Gene name dehydratase family
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g23940821977dehydratase familyF:catalytic activity, dihydroxy-acid dehydratase activity;P:branched chain family amino acid biosynthetic process, isoleucine biosynthetic process, metabolic process, valine biosynthetic process;C:chloroplast stroma, chloroplast;OBFAPMS.X.H.G.
0.6176.7At4g24830828586arginosuccinate synthase familyF:argininosuccinate synthase activity, ATP binding;P:arginine biosynthetic process;C:chloroplast stroma, chloroplast;OBMAFPS.X.H.G.
0.5673.0At4g26900828797AT-HF (HIS HF)encodes a glutamine amidotransferase and cyclase, catalyzes the fifth and sixth steps of the histidine biosynthetic pathwayS.X.H.G.
0.5469.5At3g49080824070ribosomal protein S9 family proteinF:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular;BOMAPFVS.X.H.G.
0.5368.6At1g64880842796ribosomal protein S5 family proteinF:structural constituent of ribosome, RNA binding;P:translation;C:ribosome, Golgi apparatus, intracellular;OBMFAPVS.X.H.G.
0.5368.6At5g47210834767nuclear RNA-binding protein, putativeF:RNA binding;P:biological_process unknown;C:plasma membrane;MBOPFVAS.X.H.G.
0.5166.3At3g18130821338RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C)Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1C has no phenotype on its own and probably acts redundantly with RACK1A and RACK1B.S.X.H.G.
0.5065.3At3g11710820343ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1)F:nucleotide binding, aminoacyl-tRNA ligase activity, lysine-tRNA ligase activity, ATP binding, nucleic acid binding;P:lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPS.X.H.G.
0.4862.5At1g16350838204inosine-5'-monophosphate dehydrogenase, putativeF:IMP dehydrogenase activity, catalytic activity;P:GMP biosynthetic process, metabolic process;C:cellular_component unknown;OBMFAPVS.X.H.G.
0.4862.5At3g03960819549chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:membrane;BOMFAPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
81.599.9GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
37.799.7GSM284385Arabidopsis GEP6GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
34.899.7GSM311288Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
32.699.7GSM311277Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
32.099.7GSM284384Arabidopsis GEP5GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
30.899.7GSM311274Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
26.199.7GSM265418Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
23.599.6GSM311278Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
23.499.6GSM133975Birnbaum_1-5_StageI-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
23.299.6GSM284390Arabidopsis GPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At5g05720830456RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPBC.G.S.X.
0.012e-138At4g13430826975IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)F:4 iron, 4 sulfur cluster binding, lyase activity, hydro-lyase activity;P:response to cadmium ion, metabolic process;C:chloroplast stroma, chloroplast;OBFMAPC.G.S.X.
0.022e-138At3g15630820805unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PC.G.S.X.
0.029e-136At5g192576241193unknown proteinF:unknown;P:unknown;C:unknownC.G.S.X.
0.019e-136At3g57530824920CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32)Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitroC.G.S.X.
0.014e+034Atmg00480--Encodes subunit 8 of the mitochondrial F(O) ATP synthase complex.C.G.S.X.
0.014e+034At5g37500833728GORK (GATED OUTWARDLY-RECTIFYING K+ CHANNEL)encodes a guard cell outward potassium channel. Mutants have increased water consumption and limited stomatal closure in response to abscisic and jasmonic acids. It forms a heteromeric K(out) channels with SKOR. The gene is expressed ubiquitously in root and the vasculature and guard cells of leaves. Expression is suppressed during agrobacterium-induced tumor formation and increased in response to water deprivation and cold.C.G.S.X.
0.014e+034At5g48375834891TGG3 (THIOGLUCOSIDE GLUCOSIDASE 3)Is a myrosinase pseudogene that codes for a truncated and frameshifted protein. Although TGG3 apparently is a pseudogene, its mRNA is expressed specifically in stamen and petal according to RT-PCR analysis. Western analysis shows no band of the size expected for a TGG3 protein.C.G.S.X.
0.014e+034At5g03170831914FLA11F:unknown;P:unknown;C:anchored to membrane;PBOMAFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.271e-46188Glycine maxGma.6764.1.S1_atAW394737--6e-47At3g23940dehydratase familyC.G.S.X.
0.352e-49196Hordeum vulgareContig8903_atContig8903--5e-49At3g23940dehydratase familyC.G.S.X.
0.387e-40167Oryza sativaOs08g0559600AK102083.1--4e-40At3g23940dehydratase familyC.G.S.X.
0.554e-130466Populus trichocarpaPtpAffx.200204.1.S1_atpmrna386hypothetical protein-3e-130At3g23940dehydratase familyC.G.S.X.
0.251e-33145Triticum aestivumTa.3201.1.S1_atBT009094.1--2e-33At3g23940dehydratase familyC.G.S.X.
0.337e-42171Vitis vinifera1619104_s_atCD004014hypothetical protein LOC100242520-1e-41At3g23940dehydratase familyC.G.S.X.
0.269e-33141Zea maysZm.12728.1.A1_atCA399819hypothetical protein LOC100273676-3e-32At3g23940dehydratase familyC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
LGO:0009082The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00009Link to KaPPA-View 4Leucine, valine, isoleucine and alanine biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00290Link to KEGG PATHWAYValine, leucine and isoleucine biosynthesis
00770Link to KEGG PATHWAYPantothenate and CoA biosynthesis
01065Link to KEGG PATHWAYBiosynthesis of alkaloids derived from histidine and purine
01100Link to KEGG PATHWAYMetabolic pathways
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