CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g23880

Gene name F-box family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At3g23880 821971 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;PO S.X. H.G.
0.40 50.8 At1g09570 837483 PHYA (PHYTOCHROME A) Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. S.X. H.G.
0.29 30.3 At1g67910 843119 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.22 17.5 At3g62860 825461 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:plasma membrane;BOPMFVA S.X. H.G.
0.02 0.4 At3g60530 825224 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
162.8 99.9 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
57.0 99.8 E-MEXP-1468-raw-cel-1591138820
50.6 99.8 GSM134299 Penfield_1-1_endosperm-control_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
49.2 99.8 E-MEXP-1299-raw-cel-1519902780
47.5 99.8 E-MEXP-1299-raw-cel-1519902871
47.5 99.8 GSM134300 Penfield_1-2_endosperm-control_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
43.7 99.8 GSM134516 Col-0_4day_dark_+lincomycin_rep2 GSE5759 red illumination w/o lincomycin
39.4 99.8 E-MEXP-1468-raw-cel-1591138919
37.3 99.7 GSM134520 Col-0_4day_red illumination _+lincomycin_rep2 GSE5759 red illumination w/o lincomycin
37.1 99.7 GSM134519 Col-0_4day_red illumination_+lincomycin_rep1 GSE5759 red illumination w/o lincomycin
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 4e-2 40 At3g23850 821968 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e-1 38 At5g21940 832254 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB C.G. S.X.
0.02 5e-1 36 At5g55350 835628 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related F:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOF C.G. S.X.
0.01 5e-1 36 At5g51420 835216 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein F:acyltransferase activity;P:unknown;C:unknown;PBO C.G. S.X.
0.01 5e-1 36 At5g35690 833542 - F:unknown;P:unknown;C:cellular_component unknown;FOPMBV C.G. S.X.
0.03 5e-1 36 At1g15015 6240794 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 2e+0 34 At5g45210 834557 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBOMAF C.G. S.X.
0.02 2e+0 34 At5g56110 835710 ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103) Encodes a member of the R2R3 MYB transcription factor gene family that is required for anther development by regulation tapetum development, callose dissolution and exine formation. It acts upstream of MS2. C.G. S.X.
0.01 2e+0 34 At5g51920 835267 catalytic/ pyridoxal phosphate binding F:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:chloroplast;BOPMFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Glycine max HgAffx.2174.1.S1_at CK348957 - - 9e-2 At5g57520 ZFP2 (ZINC FINGER PROTEIN 2) C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HA28N02r_at HA28N02r - - 1e-8 At2g23810 TET8 (TETRASPANIN8) C.G. S.X.
0.02 4e+0 34 Oryza sativa OsAffx.21499.1.S1_at - - - 0 C.G. S.X.
0.02 8e-1 36 Populus trichocarpa PtpAffx.48236.1.S1_at DN491169 hypothetical protein - 1e-3 At1g50420 SCL3 C.G. S.X.
0.03 6e-1 36 Triticum aestivum TaAffx.50969.1.S1_at CA732773 - - 1e+0 At5g20370 serine-rich protein-related C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1622259_at CD712226 - - 2e-1 At1g23240 caleosin-related family protein C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.778.1.A1_at AI746262 hypothetical protein LOC100193085 - 1e+1 At5g13810 glutaredoxin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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