Gene omics information

Query gene ID At3g23880
Gene name F-box family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3133.8At3g23880821971F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;POS.X.H.G.
0.4050.8At1g09570837483PHYA (PHYTOCHROME A)Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.S.X.H.G.
0.2930.3At1g67910843119unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.2217.5At3g62860825461esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:plasma membrane;BOPMFVAS.X.H.G.
0.020.4At3g60530825224zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
162.899.9GSM134301Penfield_1-3_endosperm-control_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
50.699.8GSM134299Penfield_1-1_endosperm-control_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
47.599.8GSM134300Penfield_1-2_endosperm-control_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
43.799.8GSM134516Col-0_4day_dark_+lincomycin_rep2GSE5759red illumination w/o lincomycin
37.399.7GSM134520Col-0_4day_red illumination _+lincomycin_rep2GSE5759red illumination w/o lincomycin
37.199.7GSM134519Col-0_4day_red illumination_+lincomycin_rep1GSE5759red illumination w/o lincomycin
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.034e-240At3g23850821968unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.021e-138At5g21940832254unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBC.G.S.X.
0.025e-136At5g55350835628membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-relatedF:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOFC.G.S.X.
0.015e-136At5g51420835216long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family proteinF:acyltransferase activity;P:unknown;C:unknown;PBOC.G.S.X.
0.015e-136At5g35690833542-F:unknown;P:unknown;C:cellular_component unknown;FOPMBVC.G.S.X.
0.035e-136At1g150156240794-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.012e+034At5g45210834557disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBOMAFC.G.S.X.
0.022e+034At5g56110835710ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)Encodes a member of the R2R3 MYB transcription factor gene family that is required for anther development by regulation tapetum development, callose dissolution and exine formation. It acts upstream of MS2.C.G.S.X.
0.012e+034At5g51920835267catalytic/ pyridoxal phosphate bindingF:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:chloroplast;BOPMFAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-138Glycine maxHgAffx.2174.1.S1_atCK348957--9e-2At5g57520ZFP2 (ZINC FINGER PROTEIN 2)C.G.S.X.
0.024e+032Hordeum vulgareHA28N02r_atHA28N02r--1e-8At2g23810TET8 (TETRASPANIN8)C.G.S.X.
0.024e+034Oryza sativaOsAffx.21499.1.S1_at---0C.G.S.X.
0.028e-136Populus trichocarpaPtpAffx.48236.1.S1_atDN491169hypothetical protein-1e-3At1g50420SCL3C.G.S.X.
0.036e-136Triticum aestivumTaAffx.50969.1.S1_atCA732773--1e+0At5g20370serine-rich protein-relatedC.G.S.X.
0.032e-136Vitis vinifera1622259_atCD712226--2e-1At1g23240caleosin-related family proteinC.G.S.X.
0.021e+130Zea maysZmAffx.778.1.A1_atAI746262hypothetical protein LOC100193085-1e+1At5g13810glutaredoxin family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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